Researcher
Assia Saltykova
- Disciplines:Public health services, Bioinformatics and computational biology, Public health care, Scientific computing, Biomechanical engineering, Industrial biotechnology, Biomaterials engineering, Environmental engineering and biotechnology, Other biotechnology, bio-engineering and biosystem engineering, Biological system engineering, Plant biology, Other (bio)medical engineering
Affiliations
- Department of Plant Biotechnology and Bioinformatics (Department)
Member
From25 Apr 2016 → 25 Sep 2022
Publications
1 - 10 of 10
- Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety(2022)
Authors: Assia Saltykova
- Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak(2021)
Authors: Florence Buytaers, Assia Saltykova, Wesley Mattheus, Valeska Laisnez, Bavo Verhaegen, Nancy H. C. Roosens, Kevin Vanneste, Naiima Hammami, Brigitte Pochet, Vera Cantaert, et al.
- Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies(2021)
Authors: Florence Buytaers, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Pierard, Kathleen Marchal, Sigrid C. J. De Keersmaecker
- Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study(2020)
Authors: Assia Saltykova, Florence Buytaers, Sarah Denayer, Bavo Verhaegen, Denis Piérard, Nancy H. C. Roosens, Kathleen Marchal, Sigrid C. J. De Keersmaecker
- A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine(2020)
Authors: Florence Buytaers, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal, Sigrid C. J. De Keersmaecker
- Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus(2020)
Authors: Bas Berbers, Assia Saltykova, Cristina Garcia-Graells, Patrick Philipp, Fabrice Arella, Kathleen Marchal, Raf Winand, Kevin Vanneste, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker
- Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing : Neisseria meningitidis as a proof of concept(2019)
Authors: Assia Saltykova, Wesley Mattheus, Sophie Bertrand, Nancy HC Roosens, Kathleen Marchal, Sigrid CJ De Keersmaecker
- The Chara genome : secondary complexity and implications for plant terrestrialization(2018)
Authors: Tomoaki Nishiyama, Hidetoshi Sakayama, Jan de Vries, Henrik Buschmann, Denis Saint-Marcoux, Kristian K Ullrich, Fabian B Haas, Lisa Vanderstraeten, Dirk Becker, Daniel Lang, et al.
Pages: 448 - 464 - Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-(2018)
Authors: Assia Saltykova, Véronique Wuyts, Wesley Mattheus, Sophie Bertrand, Nancy HC Roosens, Kathleen Marchal, Sigrid De Keersmaecker
- Identifying prokaryotic consortia that live in close interactions with algae(2015)Volume: 50
Authors: Assia Saltykova, Sergio Pulido-Tamayo, Marie Pazoutova, Stefan A Rensing, Tomoaki Nishiyama, Yves Van de Peer, Kathleen Marchal, Stephane Rombauts
Pages: 145 - 146