Researcher
Jan Fostier
- Disciplines:Bio-informatics, Parallel programming, High performance computing, Parallel computing
Affiliations
- Information and Communication Technology Department (Administrative office)
Member
From1 Jan 2010 → 31 Dec 2010 - Department of Information technology (Department)
Member
From1 Sep 2005 → Today
Projects
1 - 7 of 7
- Search schemes for sequence alignmentFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Search schemes for sequence alignment to pan-genome graphs.From1 Nov 2021 → TodayFunding: FWO fellowships
- Search Schemes for Sequence Alignment to Pan-Genome GraphsFrom1 Oct 2021 → 31 Oct 2021Funding: BOF - doctoral mandates
- Accurate Identification of Sequencing Errors using Probabilistic Graphical ModelsFrom1 Oct 2018 → 30 Sep 2022Funding: FWO fellowships
- De novo genome assembly using both second and third generation sequencing dataFrom1 Jan 2014 → 31 Dec 2019Funding: FWO research project (including WEAVE projects)
- Network-based approaches for the identification and mode of action determination of anti-bacterial agentsFrom1 Jan 2013 → 31 Dec 2016Funding: SBO (Strategic basic research)
- Bioinformatics: from nucleotids to networks (N2N)From1 May 2010 → 30 Apr 2017Funding: BOF - Other initiatives
Publications
1 - 10 of 102
- Improved node and arc multiplicity estimation in de Bruijn graphs using approximate inference in conditional random fields(2023)
Authors: Pieter Audenaert, Jan Fostier
Pages: 1995 - 2006 - Detecting translocation of DNA nanostructures through nanopores : first steps towards structural barcode readout(2023)
Authors: Pratima Upretee, S Santermans, K Martens, J Gevers, S Marion, W Van Den Bosch, Jan Fostier, Nilesh Madhu
Pages: 1205 - 1209 - Pan-genome de Bruijn graph using the bidirectional FM-index(2023)
Authors: Lore Depuydt, Luca Renders, Thomas Abeel, Jan Fostier
- Halvade somatic : somatic variant calling with Apache Spark(2022)
Authors: Dries Decap, Louise de Schaetzen van Brienen, Pascal Costanza, Charlotte Herzeel, Roel Wuyts, Kathleen Marchal, Jan Fostier
- Adaptive scoping : balancing short- and long-term genetic gain in plant breeding(2022)
Authors: David Vanavermaete, Jan Fostier, Steven Maenhout, Bernard De Baets
- BLSSpeller to discover novel regulatory motifs in maize(2022)
Authors: Razgar Seyed Rahmani, Dries Decap, Jan Fostier, Kathleen Marchal
- Approximate pattern matching using search schemes and in-text verification(2022)Volume: 13347
Authors: Luca Renders, Lore Depuydt, Jan Fostier, Ignacio Rojas, Olga Valenzuela, Fernando Rojas, Luis Javier Herrera, Francisco Ortuño
Pages: 419 - 435 - Multithreaded variant calling in elPrep 5(2021)
Authors: Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Roel Wuyts, Wilfried Verachtert
- Dynamic partitioning of search patterns for approximate pattern matching using search schemes(2021)
Authors: Luca Renders, Kathleen Marchal, Jan Fostier
- Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples(2020)
Authors: Louise de Schaetzen van Brienen, FREDERIC DE RYCK, Pauline Robbe Vandewalle, Anna Schuh, Jan Fostier, Piet Ost, Kathleen Marchal
Patents
1 - 1 of 1
- PROCESSING READS OF SEQUENCED NUCLEIC ACID (Inventor)