Researcher
Bert Bogaerts
- Disciplines:Public health services, Bioinformatics and computational biology, Public health care, Scientific computing, Industrial biotechnology, Biomechanical engineering, Biomaterials engineering, Environmental engineering and biotechnology, Biological system engineering, Other biotechnology, bio-engineering and biosystem engineering, Plant biology, Other (bio)medical engineering
Affiliations
- Department of Plant Biotechnology and Bioinformatics (Department)
Member
From28 Aug 2017 → 25 Sep 2022
Publications
1 - 10 of 16
- Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices(2023)
Authors: Stéphanie Nouws, Bavo Verhaegen, Sarah Denayer, Florence Crombé, Denis Piérard, Bert Bogaerts, Kevin Vanneste, Kathleen Marchal, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker
- A bioinformatics whole-genome sequencing workflow for clinical Mycobacterium tuberculosis complex isolate analysis, validated using a reference collection extensively characterized with conventional methods and in silico approaches(2021)
Authors: Bert Bogaerts, Thomas Delcourt, Karine Soetaert, Samira Boarbi, Pieter-Jan Ceyssens, Raf Winand, Julien Van Braekel, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kathleen Marchal, et al.
- Development of a data-intensive centralized system for surveillance and outbreak investigation of bacterial pathogens using whole-genome sequencing(2021)
Authors: Bert Bogaerts
- Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance(2021)
Authors: Laura Van Poelvoorde, Bert Bogaerts, Qiang Fu, Sigrid C. J. De Keersmaecker, Isabelle Thomas, Nina Van Goethem, Steven Van Gucht, Raf Winand, Nancy Roosens, Kevin Vanneste
- Whole-genome sequencing-based antimicrobial resistance characterization and phylogenomic investigation of 19 multidrug-resistant and extended-spectrum beta-lactamase-positive escherichia coli strains collected from hospital patients in Benin in 2019(2021)
Authors: Carine Laurence Yehouenou, Bert Bogaerts, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kathleen Marchal, Edmond Tchiakpe, Dissou Affolabi, Anne Simon, Francis Moise Dossou, Kevin Vanneste, et al.
- Whole genome sequencing provides an added value to the investigation of staphylococcal food poisoning outbreaks(2021)
Authors: Stéphanie Nouws, Bert Bogaerts, Bavo Verhaegen, Sarah Denayer, Lasse Laeremans, Kathleen Marchal, Nancy H. C. Roosens, Kevin Vanneste, Sigrid C. J. De Keersmaecker
- Phylogenomic investigation of increasing fluoroquinolone resistance among Belgian cases of shigellosis between 2013 and 2018 indicates both travel-related imports and domestic circulation(2021)
Authors: Bert Bogaerts, Raf Winand, Julien Van Braekel, Wesley Mattheus, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kathleen Marchal, Kevin Vanneste, Pieter-Jan Ceyssens
- Characterization of genetically modified microorganisms using short- and long-read whole-genome sequencing reveals contaminations of related origin in multiple commercial food enzyme products(2021)
Authors: Jolien D'aes, Marie-Alice Fraiture, Bert Bogaerts, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kevin Vanneste
- Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations(2021)
Authors: Bert Bogaerts, Raf Winand, Julien Van Braekel, Stefan Hoffman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal, Kevin Vanneste
- First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin(2021)
Authors: Carine Yehouenou, Bert Bogaerts, Kevin Vanneste, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal, Dissou Affolabi, Reza Soleimani, Hector Rodriguez-Villalobos, Francoise Van Bambeke, et al.