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Publication
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
Journal Contribution - Journal Article
In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field.
Journal: Autophagy
ISSN: 1554-8627
Issue: 1
Volume: 17
Pages: 1 - 382
Publication year:2021
- VABB Id: c:vabb:523826
- Institutional Repository URL: https://lirias.kuleuven.be/3396147
- DOI: https://doi.org/10.1080/15548627.2020.1797280
- PubMed Id: 33634751
- WoS Id: 000636121800001
BOF-keylabel:yes
IOF-keylabel:yes
BOF-publication weight:6
CSS-citation score:4
Authors:International
Authors from:Higher Education
Accessibility:Open
- See also: Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition).
- See also: Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
- See also: Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
- See also: Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
Authors/publisher
- DJ Klionsky (First author)
- AK Abdel-Aziz (Author)
- S Abdelfatah (Author)
- M Abdellatif (Author)
- A Abdoli (Author)
- S Abel (Author)
- H Abeliovich (Author)
- MH Abildgaard (Author)
- YP Abudu (Author)
- A Acevedo-Arozena (Author)
- IE Adamopoulos (Author)
- K Adeli (Author)
- TE Adolph (Author)
- A Adornetto (Author)
- E Aflaki (Author)
- G Agam (Author)
- A Agarwal (Author)
- BB Aggarwal (Author)
- M Agnello (Author)
- Patrizia Agostinis (Author)
- JN Agrewala (Author)
- A Agrotis (Author)
- PV Aguilar (Author)
- ST Ahmad (Author)
- ZM Ahmed (Author)
- U Ahumada-Castro (Author)
- S Aits (Author)
- S Aizawa (Author)
- Y Akkoc (Author)
- T Akoumianaki (Author)
- HA Akpinar (Author)
- AM Al-Abd (Author)
- L Al-Akra (Author)
- A Al-Gharaibeh (Author)
- MA Alaoui-Jamali (Author)
- S Alberti (Author)
- E Alcocer-Gómez (Author)
- C Alessandri (Author)
- M Ali (Author)
- MA Alim Al-Bari (Author)
- S Aliwaini (Author)
- J Alizadeh (Author)
- E Almacellas (Author)
- A Almasan (Author)
- A Alonso (Author)
- GD Alonso (Author)
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- G Velasco (Author)
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- T Vellai (Author)
- E Vellenga (Author)
- F Velotti (Author)
- M Verdier (Author)
- P Verginis (Author)
- I Vergne (Author)
- P Verkade (Author)
- M Verma (Author)
- Patrik Verstreken (Author)
- Tim Vervliet (Author)
- J Vervoorts (Author)
- AT Vessoni (Author)
- VM Victor (Author)
- M Vidal (Author)
- C Vidoni (Author)
- OV Vieira (Author)
- RD Vierstra (Author)
- S Viganó (Author)
- H Vihinen (Author)
- V Vijayan (Author)
- M Vila (Author)
- M Vilar (Author)
- JM Villalba (Author)
- A Villalobo (Author)
- B Villarejo-Zori (Author)
- F Villarroya (Author)
- J Villarroya (Author)
- O Vincent (Author)
- C Vindis (Author)
- C Viret (Author)
- MT Viscomi (Author)
- D Visnjic (Author)
- I Vitale (Author)
- DJ Vocadlo (Author)
- OV Voitsekhovskaja (Author)
- C Volonté (Author)
- M Volta (Author)
- M Vomero (Author)
- C Von Haefen (Author)
- MA Vooijs (Author)
- W Voos (Author)
- L Vucicevic (Author)
- R Wade-Martins (Author)
- S Waguri (Author)
- KA Waite (Author)
- S Wakatsuki (Author)
- DW Walker (Author)
- MJ Walker (Author)
- SA Walker (Author)
- J Walter (Author)
- FG Wandosell (Author)
- B Wang (Author)
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- L Wang (Author)
- MH Wang (Author)
- M Wang (Author)
- N Wang (Author)
- P Wang (Author)
- QJ Wang (Author)
- Q Wang (Author)
- QK Wang (Author)
- QA Wang (Author)
- W Wang (Author)
- X Wang (Author)
- Y Wang (Author)
- Z Wang (Author)
- G Warnes (Author)
- V Warnsmann (Author)
- H Watada (Author)
- E Watanabe (Author)
- M Watchon (Author)
- A Wawrzyńska (Author)
- TE Weaver (Author)
- G Wegrzyn (Author)
- AM Wehman (Author)
- H Wei (Author)
- L Wei (Author)
- T Wei (Author)
- Y Wei (Author)
- OH Weiergräber (Author)
- CC Weihl (Author)
- G Weindl (Author)
- R Weiskirchen (Author)
- A Wells (Author)
- RH Wen (Author)
- X Wen (Author)
- A Werner (Author)
- B Weykopf (Author)
- SP Wheatley (Author)
- JL Whitton (Author)
- AJ Whitworth (Author)
- K Wiktorska (Author)
- ME Wildenberg (Author)
- T Wileman (Author)
- S Wilkinson (Author)
- D Willbold (Author)
- B Williams (Author)
- RSB Williams (Author)
- RL Williams (Author)
- PR Williamson (Author)
- RA Wilson (Author)
- B Winner (Author)
- NJ Winsor (Author)
- SS Witkin (Author)
- H Wodrich (Author)
- U Woehlbier (Author)
- T Wollert (Author)
- E Wong (Author)
- JH Wong (Author)
- RW Wong (Author)
- VKW Wong (Author)
- WW Wong (Author)
- A Wu (Author)
- C Wu (Author)
- J Wu (Author)
- KK Wu (Author)
- M Wu (Author)
- S Wu (Author)
- WKK Wu (Author)
- X Wu (Author)
- Y Wu (Author)
- RJ Xavier (Author)
- H Xia (Author)
- L Xia (Author)
- Z Xia (Author)
- G Xiang (Author)
- J Xiang (Author)
- M Xiang (Author)
- W Xiang (Author)
- B Xiao (Author)
- G Xiao (Author)
- H Xiao (Author)
- J Xiao (Author)
- L Xiao (Author)
- S Xiao (Author)
- Y Xiao (Author)
- B Xie (Author)
- C Xie (Author)
- M Xie (Author)
- Y Xie (Author)
- Z Xie (Author)
- M Xilouri (Author)
- C Xu (Author)
- E Xu (Author)
- H Xu (Author)
- J Xu (Author)
- L Xu (Author)
- WW Xu (Author)
- X Xu (Author)
- Y Xue (Author)
- SMS Yakhine-Diop (Author)
- M Yamaguchi (Author)
- O Yamaguchi (Author)
- A Yamamoto (Author)
- S Yamashina (Author)
- S Yan (Author)
- Z Yan (Author)
- Y Yanagi (Author)
- C Yang (Author)
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- H Yao (Author)
- S Yao (Author)
- X Yao (Author)
- Y Yao (Author)
- T Yasui (Author)
- M Yazdankhah (Author)
- PM Yen (Author)
- C Yi (Author)
- X Yin (Author)
- Y Yin (Author)
- Z Yin (Author)
- M Ying (Author)
- Z Ying (Author)
- CK Yip (Author)
- SPT Yiu (Author)
- YH Yoo (Author)
- K Yoshida (Author)
- SR Yoshii (Author)
- T Yoshimori (Author)
- B Yousefi (Author)
- B Yu (Author)
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- M Yu (Author)
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- VC Yu (Author)
- WH Yu (Author)
- Z Yu (Author)
- J Yuan (Author)
- L Yuan (Author)
- S Yuan (Author)
- SF Yuan (Author)
- Y Yuan (Author)
- Z Yuan (Author)
- J Yue (Author)
- Z Yue (Author)
- J Yun (Author)
- RL Yung (Author)
- DN Zacks (Author)
- G Zaffagnini (Author)
- VO Zambelli (Author)
- I Zanella (Author)
- QS Zang (Author)
- S Zanivan (Author)
- S Zappavigna (Author)
- P Zaragoza (Author)
- KS Zarbalis (Author)
- A Zarebkohan (Author)
- A Zarrouk (Author)
- SO Zeitlin (Author)
- J Zeng (Author)
- E Žerovnik (Author)
- L Zhan (Author)
- B Zhang (Author)
- DD Zhang (Author)
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- J Zhang (Author)
- KYB Zhang (Author)
- LW Zhang (Author)
- L Zhang (Author)
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- T Zhao (Author)
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- G Zheng (Author)
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- B Zhivotovsky (Author)
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- R Zhou (Author)
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- B Zhu (Author)
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- W Zhu (Author)
- Y Zhu (Author)
- H Zhuang (Author)
- X Zhuang (Author)
- K Zientara-Rytter (Author)
- CM Zimmermann (Author)
- E Ziviani (Author)
- T Zoladek (Author)
- W Zong (Author)
- DB Zorov (Author)
- A Zorzano (Author)
- W Zou (Author)
- Z Zou (Author)
- S Zuryn (Author)
- W Zwerschke (Author)
- B Brand-Saberi (Author)
- XC Dong (Author)
- CS Kenchappa (Author)
- S Oshima (Author)
- Y Rong (Author)
- JC Sluimer (Author)
- CL Stallings (Author)
- C Tong (Last author)
Research units
- Laboratory of Cell Death Research & Therapy (VIB-KU Leuven)(Division)
- Laboratory of Molecular and Cellular Signaling(Division)
- Laboratory of Cell Stress & Immunity(Division)
- Environment and Health(Division)
- Laboratory of Intensive Care Medicine(Division)
- Sustainable Materials Processing and Recycling (SeMPeR)(Division)
- Translational Cell & Tissue Research(Division)
- NanoHealth and Optical Imaging Group(Lab)
- Laboratory for Parkinson Research(Lab)
- Laboratory of Neuronal Communication (VIB-KU Leuven)(Lab)
Projects
- Disturbed energy metabolism in critical illness: role in organ failure and mortality, underlying mechanisms, and therapeutic perspectives.From1 Oct 2009 → 30 Sep 2019Funding: BOF - ZAP BOF mandates
- Understanding non-genetic processes remodelling the tumor ecosystem, cancer cell death and immune escape mechanismsFrom1 Oct 2000 → TodayFunding: BOF - ZAP BOF mandates
- Synaptic dysfunction in Parkinson’s disease and neurodegeneration.From1 Oct 2009 → TodayFunding: BOF - ZAP BOF mandates
- Deciphering and targeting novel immune-checkpoints engaged by dying cancer cells, to improve anti-cancer immunotherapyFrom1 Oct 2019 → 30 Sep 2023Funding: BOF - projects
- Cellular stress and immunity in health & disease: From multimodal molecular signalling to translational impactFrom1 Oct 2019 → TodayFunding: BOF - ZAP BOF mandates
- Regulation of lysosomal function by ryanodine receptormediated Ca2+ release in health and diseaseFrom1 Oct 2020 → TodayFunding: FWO senior postdoctoral fellowship