Researcher
Klaas Vandepoele
- Keywords (Ghent University):systems biology, Plant biotechnology, bio-informatics
- Disciplines (Flanders Institute for Biotechnology):Cell death and senescence, Invasion biology, Epigenomics, Auto-ecology, Biogeography and phylogeography
- Disciplines (Ghent University):Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Systems biology not elsewhere classified, Plant cell and molecular biology, Single-cell data analysis, Analysis of next-generation sequence data, Bioinformatics and computational biology not elsewhere classified, Bioinformatics data integration and network biology
- See also: Klaas Vandepoele (Flanders Institute for Biotechnology)
Affiliations
- Vandepoele Lab (Research group)
Responsible
From1 Jan 2018 → Today - De Veylder Lab (Research group)
Member
From1 Jan 2017 → 31 Dec 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Dec 2000 → Today
Infrastructure
1 - 1 of 1
- ELIXIR Belgium (Consortium partner)
Projects
1 - 10 of 18
- The secret garden: diatom adaptation and evolution in benthic environmentsFrom1 Jan 2023 → TodayFunding: BOF - projects
- Assessment of the roles of endogenous and environmental cues controlling cell size distribution and sexual reproduction in benthic diatom populationsFrom1 Nov 2022 → TodayFunding: FWO fellowships
- Charting the functional components of the diverse sexual life cycles in diatomsFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- SpatialConnect: linking tissue biology to the new era of single-cell spatial transcriptomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Identification of the gene regulatory networks controlling vascular development in plants – a comparative approach at single-cell resolutionFrom1 Oct 2021 → 14 Oct 2022Funding: FWO junior postdoctoral fellowship
- Enzyme biodiscovery pipeline optimisation via toolbox developmentFrom1 Sep 2021 → TodayFunding: VLAIO - Catalisti - cSBO
- Software development for gene-trait discovery and prioritization in agricultural biotechnology using single-cell genomicsFrom1 Jun 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Reproductive barriers, interspecific gene flow and diversification in a globally distributed pennate diatomFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- From model species to crop: enhancing the translation of functional traits in plants using an integrative network-based approach.From1 Oct 2019 → TodayFunding: BOF - projects
- ELIXIR Infrastructure for Data and Services to strengthen Life-Sciences Research in FlandersFrom1 Jan 2019 → 31 Dec 2022Funding: FWO International research infrastructure (IRI)
Publications
21 - 30 of 133
- Diurnal transcript profiling of the diatom Seminavis robusta reveals adaptations to a benthic lifestyle(2021)
Authors: Gust Bilcke, Cristina Maria Osuna Cruz, Marta Santana Silva, Nicole Poulsen, Sofie D'hondt, Petra Bulánková, Wim Vyverman, Lieven De Veylder, Klaas Vandepoele
Pages: 315 - 336 - TRAPID 2.0 : a web application for taxonomic and functional analysis of de novo transcriptomes(2021)
Authors: François Bucchini, Andrea Del Cortona, Lukasz Kreft, Alexander Botzki, Michiel Van Bel, Klaas Vandepoele
- Comment on U+2018Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plantsU+2019 : the importance of taking the GO graph structure into account(2021)
Authors: Michiel Van Bel, Klaas Vandepoele, Alfonso Valencia
Pages: 5558 - 5560 - Subfunctionalization of paralog transcription factors contributes to regulation of alkaloid pathway branch choice in Catharanthus roseus(2021)
Authors: Maite Colinas Martinez, Jacob Pollier, Dries Vaneechoutte, Deniz Malat, Fabian Schweizer, Liesbeth De Milde, Rebecca De Clercq, Joana G. Guedes, Teresa Martínez-Cortés, Francisco Hidalgo, et al.
- Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta(2021)
Authors: Gust Bilcke, Lore Van Craenenbroeck, Alexandre Castagna Mourão e Lima, Cristina Maria Osuna Cruz, Klaas Vandepoele, Koen Sabbe, Lieven De Veylder, Wim Vyverman
- Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass(2021)
Authors: José Luis BlancoU+2010Pastor, Philippe Barre, Thomas Keep, Thomas Ledauphin, Abraham EscobarU+2010Gutiérrez, Anna Maria Roschanski, Evelyn Willner, Klaus J. Dehmer, Matthew Hegarty, Hilde Muylle, et al.
Pages: 849 - 870 - A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies(2021)
Authors: Junha Shin, Harald Marx, Alicia Richards, Dries Vaneechoutte, Dhileepkumar Jayaraman, Junko Maeda, Sanhita Chakraborty, Michael Sussman, Klaas Vandepoele, Jean-Michel Ané, et al.
- Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta(2021)
Authors: Gust Bilcke, Koen Van den Berge, Sam De Decker, Nicole Poulsen, Petra Bulánková, Cristina Maria Osuna Cruz, Jack Dickenson, Koen Sabbe, Georg Pohnert, Klaas Vandepoele, et al.
Pages: 562 - 576 - Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate(2021)
Authors: Ramon Massana, Aurelie Labarre, David López-Escardó, Aleix Obiol, François Bucchini, Thomas Hackl, Matthias G. Fischer, Klaas Vandepoele, Denis V. Tikhonenkov, Filip Husnik, et al.
Pages: 154 - 167 - Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators(2021)
Authors: Inge De Clercq, Jan Van de Velde, Xiaopeng Luo, Li Liu, Veronique Storme, Michiel Van Bel, Robin Pottie, Dries Vaneechoutte, Frank Van Breusegem, Klaas Vandepoele
Pages: 500 - 513