Researcher
Klaas Vandepoele
- Keywords (Ghent University):systems biology, Plant biotechnology, bio-informatics
- Disciplines (Flanders Institute for Biotechnology):Cell death and senescence, Invasion biology, Epigenomics, Auto-ecology, Biogeography and phylogeography
- Disciplines (Ghent University):Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Systems biology not elsewhere classified, Plant cell and molecular biology, Single-cell data analysis, Analysis of next-generation sequence data, Bioinformatics and computational biology not elsewhere classified, Bioinformatics data integration and network biology
- See also: Klaas Vandepoele (Flanders Institute for Biotechnology)
Affiliations
- Vandepoele Lab (Research group)
Responsible
From1 Jan 2018 → Today - De Veylder Lab (Research group)
Member
From1 Jan 2017 → 31 Dec 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Dec 2000 → Today
Infrastructure
1 - 1 of 1
- ELIXIR Belgium (Consortium partner)
Projects
1 - 10 of 18
- The secret garden: diatom adaptation and evolution in benthic environmentsFrom1 Jan 2023 → TodayFunding: BOF - projects
- Assessment of the roles of endogenous and environmental cues controlling cell size distribution and sexual reproduction in benthic diatom populationsFrom1 Nov 2022 → TodayFunding: FWO fellowships
- Charting the functional components of the diverse sexual life cycles in diatomsFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- SpatialConnect: linking tissue biology to the new era of single-cell spatial transcriptomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Identification of the gene regulatory networks controlling vascular development in plants – a comparative approach at single-cell resolutionFrom1 Oct 2021 → 14 Oct 2022Funding: FWO junior postdoctoral fellowship
- Enzyme biodiscovery pipeline optimisation via toolbox developmentFrom1 Sep 2021 → TodayFunding: VLAIO - Catalisti - cSBO
- Software development for gene-trait discovery and prioritization in agricultural biotechnology using single-cell genomicsFrom1 Jun 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Reproductive barriers, interspecific gene flow and diversification in a globally distributed pennate diatomFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- From model species to crop: enhancing the translation of functional traits in plants using an integrative network-based approach.From1 Oct 2019 → TodayFunding: BOF - projects
- ELIXIR Infrastructure for Data and Services to strengthen Life-Sciences Research in FlandersFrom1 Jan 2019 → 31 Dec 2022Funding: FWO International research infrastructure (IRI)
Publications
91 - 100 of 133
- A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana(2014)
Authors: Ken Heyndrickx, Jan Van de Velde, Congmao Wang, Detlef Weigel, Klaas Vandepoele
Pages: 3894 - 3910 - Big data and other challenges in the quest for orthologs(2014)
Authors: Erik LL Sonnhammer, Toni Gabaldón, Alan W Sousa da Silva, Maria Martin, Marc Robinson-Rechavi, Brigitte Boeckmann, Paul D Thomas, Christine Dessimoz, the Quest Orthologs Consortium, Michiel Van Bel, et al.
Pages: 2993 - 2998 - A parallel, distributed-memory framework for comparative motif discovery(2014)Volume: 8385
Authors: Dieter De Witte, Michiel Van Bel, Pieter Audenaert, Piet Demeester, Bart Dhoedt, Klaas Vandepoele, Jan Fostier, R Wyrzykowski, J Dongarra, K Karczewski, et al.
Pages: 268 - 277 - MAGIC: access portal to a cross-platform gene expression compendium for maize(2014)
Authors: Qiang Fu, Ana Carolina Elisa Fierro Gutierrez, Pieter Meysman, Klaas Vandepoele, Kathleen Marchal, Kristof Engelen
Pages: 1316 - 1318 - Structural and functional partitioning of bread wheat chromosome 3B(2014)
Authors: Frédéric Choulet, Adriana Alberti, Sébastien Theil, Natasha Glover, Valérie Barbe, Josquin Daron, Lise Pingault, Pierre Sourdille, Arnaud Couloux, Etienne Paux, et al.
- A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification(2014)
Authors: Aurine Verkest, Thomas Abeel, Ken Heyndrickx, Jelle Van Leene, Christa Lanz, Eveline Van De Slijke, Nancy De Winne, Dominique Eeckhout, Geert Persiau, Frank Van Breusegem, et al.
Pages: 1122 - 1133 - SHUGOSHINs and PATRONUS protect meiotic centromere cohesion in Arabidopsis thaliana(2014)
Authors: Linda Zamariola, Nico De Storme, Katrijn Vannerum, Klaas Vandepoele, Susan J Armstrong, F Christopher H Franklin, Danny Geelen
Pages: 782 - 794 - Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways(2014)
Authors: Lívia Vargas, Ailton B Santa Brigida, José P Mota Filho, Thais G de Carvalho, Cristian A Rojas, Dries Vaneechoutte, Michiel Van Bel, Laurent Farrinelli, Paulo CG Ferreira, Klaas Vandepoele, et al.
- Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants(2013)
Authors: Riet De Smet, Keith L Adams, Klaas Vandepoele, Marc Van Montagu, Steven Maere, Yves Van de Peer
Pages: 2898 - 2903 - TRAPID : an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes(2013)
Authors: Michiel Van Bel, Sebastian Proost, Christophe Van Neste, Dieter Deforce, Yves Van de Peer, Klaas Vandepoele