Researcher
Lennart Martens
- Keywords (Ghent University):Metabolomics, systems biology, bio-informatics, bioinformatics, Proteomics, Machine Learning
- Disciplines (Flanders Institute for Biotechnology):General diagnostics, Analytical biochemistry, Cell death and senescence, Analysis of next-generation sequence data
- Disciplines (Ghent University):Structural bioinformatics and computational proteomics, Bioinformatics of disease, Microbiomics, Bioinformatics data integration and network biology, Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Proteomics, Medical proteomics
- See also: Lennart Martens (Flanders Institute for Biotechnology)
Affiliations
- Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → Today - Martens Lab (Research group)
Responsible
From1 Jan 2017 → Today - Department of Biochemistry (Department)
Member
From1 Mar 2002 → 30 Sep 2018
Projects
1 - 10 of 35
- Unipept Next: A differential, multi-omics, highly flexible UnipeptFrom1 Nov 2023 → TodayFunding: BOF - postdoctoral mandates
- A diaPASEF powered computational deep dive into the myotonic dystrophy type 1 liquid biopsy proteomeFrom1 Nov 2023 → TodayFunding: FWO Strategic Basic Research Grant
- Putting the AI in DIA - building an ML-driven multi-modification engineFrom1 Oct 2023 → TodayFunding: FWO senior postdoctoral fellowship
- Context-aware identification of kinase-substrate association and protein phosphorylation through large scale proteomics experiment reprocessing.From1 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- Tackling the big metaproteomics identification challenge in hypercomplex application domainsFrom1 Oct 2023 → TodayFunding: FWO junior postdoctoral fellowship
- Advanced AI-driven Bioinformatics Solutions for Performant PeptidomicsFrom1 Jan 2023 → TodayFunding: FWO research project (including WEAVE projects)
- A novel era in proteomics-based protein PTM discovery through deep learning approachesFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- A new fragment-centric perspective on proteomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Improved data-driven bioinformatics tools to greatly extend neo- and xeno-epitope landscapes detected by immunopeptidomics.From1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Proteomics-derived epitopes for dramatically improved anticancer and antibacterial vaccine developmentFrom1 Jan 2021 → TodayFunding: BOF - projects
Publications
1 - 10 of 231
- Machine learning on large-scale proteomics data identifies tissue and cell-type specific proteins(2023)
Authors: Tine Claeys, Maxime Menu, Robbin Bouwmeester, Lennart Martens
Pages: 1181 - 1192 - Quality control for the target decoy approach for peptide identification(2023)
Authors: Elke Debrie, Milan Malfait, Ralf Gabriels, Arthur Declercq, Adriaan Sticker, Lennart Martens, Lieven Clement
Pages: 350 - 358 - Toward an integrated machine learning model of a proteomics experiment(2023)
Authors: Benjamin A. Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W. Deutsch, Siegfried Gessulat, Lukas Kaell, Pawel Palczynski, et al.
Pages: 681 - 696 - Updated MS²PIP web server supports cutting-edge proteomics applications(2023)
Authors: Arthur Declercq, Robbin Bouwmeester, Cristina Chiva, Eduard Sabido, Aurelie Hirschler, Christine Carapito, Lennart Martens, Sven Degroeve, Ralf Gabriels
Pages: W338 - W342 - lesSDRF is more : maximizing the value of proteomics data through streamlined metadata annotation(2023)
Authors: Tine Claeys, Tim Van Den Bossche, Yasset Perez-Riverol, Kris Gevaert, Juan Antonio Vizcaíno, Lennart Martens
- The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions(2023)
Authors: Myrsini Sakarika, Frederiek-Maarten Kerckhof, Lotte Van Peteghem, Alexandra Pinto Martins Pereira, Tim Van Den Bossche, Robbin Bouwmeester, Ralf Gabriels, Delphi Van Haver, Barbara Ulčar, Lennart Martens, et al.
- Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses(2023)
Authors: Pieter Verschaffelt, Alessandro Tanca, Marcello Abbondio, Tim Van Den Bossche, Tibo Vande Moortele, Peter Dawyndt, Lennart Martens, Bart Mesuere
Pages: 2620 - 2628 - MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates(2022)
Authors: Arthur Declercq, Robbin Bouwmeester, Aurélie Hirschler, Christine Carapito, Lennart Martens
- Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files(2022)
Authors: Kay Schallert, Bart Mesuere, Dirk Benndorf, Lennart Martens
Pages: 1175 - 1180 - Unipept visualizations : an interactive visualization library for biological data(2022)
Authors: Pieter Verschaffelt, James Collier, Alexander Botzki, Lennart Martens, Peter Dawyndt, Bart Mesuere, Russell Schwartz
Pages: 562 - 563
Patents
1 - 1 of 1