Researcher
Lennart Martens
- Keywords (Ghent University):Metabolomics, systems biology, bio-informatics, bioinformatics, Proteomics, Machine Learning
- Disciplines (Flanders Institute for Biotechnology):General diagnostics, Analytical biochemistry, Cell death and senescence, Analysis of next-generation sequence data
- Disciplines (Ghent University):Structural bioinformatics and computational proteomics, Bioinformatics of disease, Microbiomics, Bioinformatics data integration and network biology, Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Proteomics, Medical proteomics
- See also: Lennart Martens (Flanders Institute for Biotechnology)
Affiliations
- Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → Today - Martens Lab (Research group)
Responsible
From1 Jan 2017 → Today - Department of Biochemistry (Department)
Member
From1 Mar 2002 → 30 Sep 2018
Projects
1 - 10 of 35
- Unipept Next: A differential, multi-omics, highly flexible UnipeptFrom1 Nov 2023 → TodayFunding: BOF - postdoctoral mandates
- A diaPASEF powered computational deep dive into the myotonic dystrophy type 1 liquid biopsy proteomeFrom1 Nov 2023 → TodayFunding: FWO Strategic Basic Research Grant
- Putting the AI in DIA - building an ML-driven multi-modification engineFrom1 Oct 2023 → TodayFunding: FWO senior postdoctoral fellowship
- Context-aware identification of kinase-substrate association and protein phosphorylation through large scale proteomics experiment reprocessing.From1 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- Tackling the big metaproteomics identification challenge in hypercomplex application domainsFrom1 Oct 2023 → TodayFunding: FWO junior postdoctoral fellowship
- Advanced AI-driven Bioinformatics Solutions for Performant PeptidomicsFrom1 Jan 2023 → TodayFunding: FWO research project (including WEAVE projects)
- A novel era in proteomics-based protein PTM discovery through deep learning approachesFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- A new fragment-centric perspective on proteomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Improved data-driven bioinformatics tools to greatly extend neo- and xeno-epitope landscapes detected by immunopeptidomics.From1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Proteomics-derived epitopes for dramatically improved anticancer and antibacterial vaccine developmentFrom1 Jan 2021 → TodayFunding: BOF - projects
Publications
11 - 20 of 232
- Unipept visualizations : an interactive visualization library for biological data(2022)
Authors: Pieter Verschaffelt, James Collier, Alexander Botzki, Lennart Martens, Peter Dawyndt, Bart Mesuere, Russell Schwartz
Pages: 562 - 563 - A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics(2022)
Authors: Bart Van Puyvelde, Simon Daled, Sander Willems, Anne Gonzalez de Peredo, Karima Chaoui, Emmanuelle Mouton-Barbosa, David Bouyssié, Kurt Boonen, Christopher J. Hughes, Lee A. Gethings, et al.
- Orthogonal proteomics methods to unravel the HOTAIR interactome(2022)
Authors: Louis Delhaye, Edith De Bruycker, Pieter-Jan Volders, Daria Fijalkowska, Delphine De Sutter, Sven Degroeve, Lennart Martens, Pieter Mestdagh, Sven Eyckerman
- psm_utils : a high-level python API for parsing and handling peptide-spectrum matches and proteomics search results(2022)
Authors: Ralf Gabriels, Arthur Declercq, Robbin Bouwmeester, Sven Degroeve, Lennart Martens
Pages: 557 - 560 - Immunopeptidomics-based design of mRNA vaccine formulations against Listeria monocytogenes(2022)
Authors: Rupert Mayer, Rein Verbeke, Caroline Asselman, Ilke Aernout, Adillah Gul, Denzel Eggermont, Katie Boucher, Fabien Henri Thery, Teresa Maia, Hans Demol, et al.
- An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia(2022)
Authors: Lien Provez, Bart Van Puyvelde, Laura Corveleyn, Nina Demeulemeester, Sigrid Verhelst, Beatrice Lintermans, Simon Daled, Juliette Roels, Lieven Clement, Lennart Martens, et al.
- Cov²MS : an automated and quantitative matrix-independent assay for mass spectrometric measurement of SARS-CoV-2 nucleocapsid protein(2022)
Authors: Bart Van Puyvelde, Katleen Van Uytfanghe, Laurence Van Oudenhove, Tessa Van Royen, Arne Matthys, Morteza Razavi, Richard Yip, Terry Pearson, Nicolas Drouin, Jan Claereboudt, et al.
Pages: 17379 - 17387 - Sensitive and specific spectral library searching with CompOmics Spectral library Searching tool and Percolator(2022)
Authors: Genet Abay Shiferaw, Ralf Gabriels, Robbin Bouwmeester, Tim Van Den Bossche, Elien Vandermarliere, Lennart Martens, Pieter-Jan Volders
Pages: 1365 - 1370 - DeepLC can predict retention times for peptides that carry as-yet unseen modifications(2021)
Authors: Robbin Bouwmeester, Niels Hulstaert, Lennart Martens
Pages: 1363 - + - Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients(2021)
Authors: Bart Van Puyvelde, Katleen Van Uytfanghe, Olivier Tytgat, Laurence Van Oudenhove, Robbin Bouwmeester, Simon Daled, Sigrid Verhelst, Laura De Clerck, Laura Corveleyn, Sander Willems, et al.
Pages: 750 - 765
Patents
1 - 1 of 1