Researcher
Lennart Martens
- Keywords (Ghent University):Metabolomics, systems biology, bio-informatics, bioinformatics, Proteomics, Machine Learning
- Disciplines (Flanders Institute for Biotechnology):General diagnostics, Analytical biochemistry, Cell death and senescence, Analysis of next-generation sequence data
- Disciplines (Ghent University):Structural bioinformatics and computational proteomics, Bioinformatics of disease, Microbiomics, Bioinformatics data integration and network biology, Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Proteomics, Medical proteomics
- See also: Lennart Martens (Flanders Institute for Biotechnology)
Affiliations
- Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → Today - Martens Lab (Research group)
Responsible
From1 Jan 2017 → Today - Department of Biochemistry (Department)
Member
From1 Mar 2002 → 30 Sep 2018
Projects
21 - 30 of 35
- Recognition and Validation of Druggable Targets from the Response to Cognitive Behaviour Therapy in Myotonic Dystrophy type 1 patients from Integrated -Omics NetworksFrom1 Apr 2019 → 31 Mar 2021Funding: FWO research project (including WEAVE projects)
- The online Tabloid Proteome: a unique resource to build and mine the protein association network.From1 Oct 2018 → 31 Mar 2021Funding: BOF - Doctoral projects
- FWO Sabbatical Martens LennaertFrom1 Jun 2018 → 31 Aug 2018Funding: FWO Prices and sabbaticals (before FWO undefined)
- A novel, data driven-paradigm for the sensitive identification of
phosphopeptidesFrom1 Jan 2018 → 31 Dec 2021Funding: FWO Strategic Basic Research Grant
- A jump start for metaproteomics informaticsFrom1 Jan 2018 → 31 Dec 2021Funding: FWO research project (including WEAVE projects)
- A computational framework for sensitive and specific quantitative
metaproteomicsFrom1 Jan 2018 → 31 Dec 2021Funding: FWO Strategic Basic Research Grant
- Novel feed ingredients from sustainable sourcesFrom1 Jan 2017 → 31 Dec 2019Funding: FWO research project (including WEAVE projects)
- FoldMod: The role of local amino acid interactions in protein folding, fold stability and the location of post-translational modificationsFrom1 Jan 2016 → 31 Dec 2019Funding: FWO research project (including WEAVE projects)
- SprInt: a novel platform for structural proteomics data integration.From1 Oct 2015 → 31 Oct 2018Funding: FWO fellowships
- Capture, dissemination and analysis of multiscale cell migration data for biological and clinical applications (MULTIMOT)From1 Aug 2015 → 31 Jul 2018Funding: H2020-EU.3.1. - SOCIETAL CHALLENGES - Health, demographic change and wellbeing, BOF - Other initiatives
Publications
1 - 10 of 231
- Machine learning on large-scale proteomics data identifies tissue and cell-type specific proteins(2023)
Authors: Tine Claeys, Maxime Menu, Robbin Bouwmeester, Lennart Martens
Pages: 1181 - 1192 - Quality control for the target decoy approach for peptide identification(2023)
Authors: Elke Debrie, Milan Malfait, Ralf Gabriels, Arthur Declercq, Adriaan Sticker, Lennart Martens, Lieven Clement
Pages: 350 - 358 - Toward an integrated machine learning model of a proteomics experiment(2023)
Authors: Benjamin A. Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W. Deutsch, Siegfried Gessulat, Lukas Kaell, Pawel Palczynski, et al.
Pages: 681 - 696 - Updated MS²PIP web server supports cutting-edge proteomics applications(2023)
Authors: Arthur Declercq, Robbin Bouwmeester, Cristina Chiva, Eduard Sabido, Aurelie Hirschler, Christine Carapito, Lennart Martens, Sven Degroeve, Ralf Gabriels
Pages: W338 - W342 - lesSDRF is more : maximizing the value of proteomics data through streamlined metadata annotation(2023)
Authors: Tine Claeys, Tim Van Den Bossche, Yasset Perez-Riverol, Kris Gevaert, Juan Antonio Vizcaíno, Lennart Martens
- The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions(2023)
Authors: Myrsini Sakarika, Frederiek-Maarten Kerckhof, Lotte Van Peteghem, Alexandra Pinto Martins Pereira, Tim Van Den Bossche, Robbin Bouwmeester, Ralf Gabriels, Delphi Van Haver, Barbara Ulčar, Lennart Martens, et al.
- Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses(2023)
Authors: Pieter Verschaffelt, Alessandro Tanca, Marcello Abbondio, Tim Van Den Bossche, Tibo Vande Moortele, Peter Dawyndt, Lennart Martens, Bart Mesuere
Pages: 2620 - 2628 - MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates(2022)
Authors: Arthur Declercq, Robbin Bouwmeester, Aurélie Hirschler, Christine Carapito, Lennart Martens
- Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files(2022)
Authors: Kay Schallert, Bart Mesuere, Dirk Benndorf, Lennart Martens
Pages: 1175 - 1180 - Unipept visualizations : an interactive visualization library for biological data(2022)
Authors: Pieter Verschaffelt, James Collier, Alexander Botzki, Lennart Martens, Peter Dawyndt, Bart Mesuere, Russell Schwartz
Pages: 562 - 563
Patents
1 - 1 of 1