Researcher
Petra Van Damme
- Keywords:proteomics, bacterial pathogen, riboproteogenomics, proteoforms, host-microbe interaction, genome (re-)annotation, (alternative) translation initiation
- Disciplines:Transcription and translation, Proteomics, Transcriptomics, Interactomics, Infectious diseases
Affiliations
- Department of Biochemistry and microbiology (Department)
Member
From1 Mar 2019 → Today - Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → 28 Feb 2019 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 May 2018 → 30 Sep 2018 - Department of Biochemistry (Department)
Member
From1 Feb 2003 → 30 Sep 2018 - Department of Biomedical molecular biology (Department)
Member
From1 Jan 2002 → 31 Aug 2002
Projects
1 - 10 of 10
- Novel mechanisms of inflammation and cell death regulation in autoinflammatory and infectious diseasesFrom1 Jan 2023 → TodayFunding: BOF - projects
- Microarrays for the phenotypic characterization of axenic cultures, bacterial mutants and microbiome communitiesFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Unraveling the heterogeneous nature of host/pathogen encounters and their role in bacterial pathogenesis.From1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- Preparative and analytical ultracentrifugation to aid integrative, multi-omics studies.From1 Dec 2020 → 30 Nov 2022Funding: BOF - scientific equipment program
- A MALDI-8020 mass spectrometer for peptide and protein analysis.From1 Dec 2020 → 30 Nov 2022Funding: BOF - scientific equipment program
- Riboproteogenomics of the sORF-encoded Salmonella peptidomeFrom1 Jan 2020 → 31 Dec 2023Funding: FWO research project (including WEAVE projects)
- Proteogenomic-assisted exploration of the molecular mechanisms underlying Salmonella infectionFrom1 Oct 2019 → 31 Mar 2022Funding: BOF - postdoctoral mandates
- Riboproteogenomics in aid of bacterial pathogen/host interaction studiesFrom15 Apr 2019 → 14 Feb 2024Funding: BOF - projects
- PROPHECY: Translational control in infection biology: riboproteogenomics of bacterial pathogensFrom1 Nov 2018 → 31 Oct 2023Funding: H2020-EU.1.1. - EXCELLENT SCIENCE - European Research Council (ERC)
- Special Research Fund Professorship in proteomicsFrom1 Oct 2018 → TodayFunding: BOF - ZAP BOF mandates
Publications
1 - 10 of 38
- Identification of plant protein-metabolite interactions by limited proteolysis-coupled mass spectrometry (LiP-MS)(2023)Series: Methods in Molecular Biology
Authors: Jhon Jairo Venegas Molina, Petra Van Damme, Alain Goossens, Aleksandra Skirycz, Marcin Luzarowski, Jennifer C. Ewald
Pages: 47 - 67 - Cataloguing protein complexes in planta using TurboID-catalyzed proximity labeling(2023)Series: Methods in Molecular Biology
Authors: Lore Gryffroy, Joren De Ryck, Veronique Jonckheere, Sofie Goormachtig, Alain Goossens, Petra Van Damme, Shahid Mukhtar
Pages: 311 - 334 - Exposing the small protein load of bacterial life(2023)
Authors: Laure Simoens, Igor Fijalkowski, Petra Van Damme
- N-terminal acetyltransferase Naa40p whereabouts put into N-terminal proteoform perspective(2021)
Authors: Veronique Jonckheere, Petra Van Damme
- Capturing salmonella SspH2 host targets in virus-like particles(2021)
Authors: Margaux De Meyer, Igor Fijalkowski, Veronique Jonckheere, Delphine De Sutter, Sven Eyckerman, Petra Van Damme
- Small protein enrichment improves proteomics detection of sORF encoded polypeptides(2021)
Authors: Igor Fijalkowski, Marlies Peeters, Petra Van Damme
- Charting the N-terminal acetylome : a comprehensive map of human NatA substrates(2021)
Authors: Petra Van Damme
- Bacterial riboproteogenomics : the era of N-terminal proteoform existence revealed(2020)
Authors: Daria Fijalkowska, Igor Fijalkowski, Patrick Willems, Petra Van Damme
Pages: 418 - 431 - Lost and found : re-searching and re-scoring proteomics data aids genome annotation and improves proteome coverage(2020)
Authors: Patrick Willems, Igor Fijalkowski, Petra Van Damme
- PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms(2019)
Authors: Steven Verbruggen, Elvis Ndah, Wim Van Criekinge, Siegfried Gessulat, Bernhard Kuster, Mathias Wilhelm, Gerben Menschaert, Petra Van Damme
Pages: S126 - S140