Researcher
Stein Aerts
- Disciplines (Flanders Institute for Biotechnology):Adaptive agents and intelligent robotics
- Disciplines (KU Leuven):Other biological sciences
- See also: Stein Aerts (Flanders Institute for Biotechnology)
Affiliations
- Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Responsible
From1 Oct 2009 → Today - VIB Center for AI & Computational Biology (Research Center)
Responsible
From1 Jul 2023 → Today - C20 Support (Research group)
Responsible
From1 Jul 2023 → 31 Dec 2023 - Dynamical Systems, Signal Processing and Data Analytics (STADIUS) (Division)
Member
From1 Aug 2020 → 30 Sep 2004 - Aerts Lab (Research group)
Responsible
From1 Jan 2017 → Today - Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Member
From1 Oct 2009 → Today - Department of Human Genetics (Department)
Member
From1 Oct 2005 → 30 Nov 2017
Projects
1 - 10 of 66
- Understanding gene regulation in a whole animal: From building a regulatory atlas to decoding gene regulation with deep learningFrom10 Jan 2024 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- SpaceTimeOmics: combining high-throughput spatial omics with AI to model gene regulation in space and timeFrom1 Jan 2024 → TodayFunding: FWO research project (including WEAVE projects)
- Interpretation of genomic regulatory variation in the human brain and Parkinson’s Disease by integrating deep learning with single-cell multi-omicsFrom1 Oct 2023 → TodayFunding: FWO junior postdoctoral fellowship
- Deep learning based synthetic design and massively parallel reporter assays to characterize and exploit cell type specific enhancersFrom1 Oct 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Enhancer-AI: AI-driven modelling and design of cell type specific enhancers for gene therapyFrom1 Oct 2023 → TodayFunding: FWO Strategic Basic Research (SBO)
- Deep learning solutions for deciphering gene regulation in the human brainFrom7 Mar 2023 → TodayFunding: FWO Strategic Basic Research Grant
- Applications of deep learning for cancer genomicsFrom1 Jan 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Evolution of the genomic regulatory code underlying neuronal diversityFrom1 Oct 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- SymBioSys: Computationally mapping genomic heterogeneity from long read sequencing dataFrom1 Oct 2022 → TodayFunding: BOF - projects
- A whole-organism approach to uncover gene regulatory mechanisms in Drosophila melanogaster: towards a regulatory map at single-cell resolutionFrom1 Oct 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
Publications
11 - 20 of 123
- Reverse engineering cellular identity at single-cell resolution(2023)
Authors: Carmen Bravo González-Blas, Stein Aerts, Georg Halder
- Decoding gene regulation in the fly brain(2022)
Authors: Jasper Janssens, Stein Aerts, Jeroen Lammertyn
- Cell type diversity in a developing octopus brain(2022)
Authors: Ruth Styfhals, Katina Spanier, Ali Murat ELAGOZ, Seppe De Winter, Astrid Deryckere, Stein Aerts, Eve Seuntjens
- Hippo signaling instructs ectopic but not normal organ growth(2022)
Authors: Weronika Kowalczyk, Hanne Hillen, Jun Xie, Soheil Soheily, Ivan Moya, Stein Aerts, Georg Halder
Pages: 744 - + - A real-world single-centre analysis of the safety and efficacy of cladribine tablets for relapsing multiple sclerosis(2022)
Authors: Stein Aerts
Pages: 892 - 892 - How regulatory sequences learn cell representations New computational method uses convolutional neural networks for cis-regulatory sequence analysis to analyze and cluster scATAC-seq data(2022)
Authors: Stein Aerts
Pages: 1041 - 1043 - Of Men and Water Fleas: Gene regulatory network discovery in human cancer and in an ecological context(2022)
Authors: Katina Spanier, Luc De Meester, Stein Aerts, Luisa Orsini
- Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly(2022)
Authors: Jasper Janssens, Kristofer Davie, Stein Aerts
Pages: 991 - + - Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads(2022)
Authors: Florian De Rop, Jasper Janssens, Koen Theunis, Valerie Christiaens, Jasper Wouters, Gabriele Marcassa, Joris de Wit, Stein Aerts
- Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq(2022)
Authors: Isabelle Scheyltjens, Stein Aerts