Researcher
Stein Aerts
- Disciplines (Flanders Institute for Biotechnology):Adaptive agents and intelligent robotics
- Disciplines (KU Leuven):Other biological sciences
- See also: Stein Aerts (Flanders Institute for Biotechnology)
Affiliations
- Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Responsible
From1 Oct 2009 → Today - VIB Center for AI & Computational Biology (Research Center)
Responsible
From1 Jul 2023 → Today - C20 Support (Research group)
Responsible
From1 Jul 2023 → 31 Dec 2023 - Dynamical Systems, Signal Processing and Data Analytics (STADIUS) (Division)
Member
From1 Aug 2020 → 30 Sep 2004 - Aerts Lab (Research group)
Responsible
From1 Jan 2017 → Today - Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Member
From1 Oct 2009 → Today - Department of Human Genetics (Department)
Member
From1 Oct 2005 → 30 Nov 2017
Projects
1 - 10 of 66
- Understanding gene regulation in a whole animal: From building a regulatory atlas to decoding gene regulation with deep learningFrom10 Jan 2024 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- SpaceTimeOmics: combining high-throughput spatial omics with AI to model gene regulation in space and timeFrom1 Jan 2024 → TodayFunding: FWO research project (including WEAVE projects)
- Interpretation of genomic regulatory variation in the human brain and Parkinson’s Disease by integrating deep learning with single-cell multi-omicsFrom1 Oct 2023 → TodayFunding: FWO junior postdoctoral fellowship
- Deep learning based synthetic design and massively parallel reporter assays to characterize and exploit cell type specific enhancersFrom1 Oct 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Enhancer-AI: AI-driven modelling and design of cell type specific enhancers for gene therapyFrom1 Oct 2023 → TodayFunding: FWO Strategic Basic Research (SBO)
- Deep learning solutions for deciphering gene regulation in the human brainFrom7 Mar 2023 → TodayFunding: FWO Strategic Basic Research Grant
- Applications of deep learning for cancer genomicsFrom1 Jan 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Evolution of the genomic regulatory code underlying neuronal diversityFrom1 Oct 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- SymBioSys: Computationally mapping genomic heterogeneity from long read sequencing dataFrom1 Oct 2022 → TodayFunding: BOF - projects
- A whole-organism approach to uncover gene regulatory mechanisms in Drosophila melanogaster: towards a regulatory map at single-cell resolutionFrom1 Oct 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
Publications
31 - 40 of 123
- Unravelling enhancer landscapes in melanoma(2020)
Authors: Liesbeth Minnoye, Stein Aerts, Jasper Wouters, Chris Marine
- LifeTime and improving European healthcare through cell-based interceptive medicine(2020)
Authors: Stein Aerts, Bart De Strooper, Chris Marine, Thierry Voet
Pages: 377 - 386 - Drosophila Voltage-Gated Sodium Channels Are Only Expressed in Active Neurons and Are Localized to Distal Axonal Initial Segment-like Domains(2020)
Authors: Jasper Janssens, Stein Aerts
Pages: 7999 - 8024 - Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma(2020)
Authors: Jasper Wouters, Liesbeth Minnoye, Katina Spanier, David Mauduit, Kristofer Davie, Michael Dewaele, Dennis Pedri, Frederik Ceyssens, Chris Marine, Stein Aerts
Pages: 986 - + - A scalable SCENIC workflow for single-cell gene regulatory network analysis(2020)
Authors: Kristofer Davie, Sara Aibar Santos, Stein Aerts
Pages: 2247 - 2276 - Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings(2020)
Authors: Kristofer Davie, Stein Aerts
- Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics(2020)
Authors: Ibrahim Ihsan Taskiran, Kristofer Davie, Valerie Christiaens, David Mauduit, Stein Aerts
- Peritumoral activation of the Hippo pathway effectors YAP and TAZ suppresses liver cancer in mice(2019)
Authors: Ivan Moya, Stephanie Castaldo, Soheil Soheily, Jun Xie, Elisabeth Verboven, Hanne Hillen, Ruçhan Karaman, Matthias Van Haele, Weronika Kowalczyk, Panagiotis Karras, et al.
Pages: 1029 - 1034 - Cortical Neurogenesis Requires Bcl6-Mediated Transcriptional Repression of Multiple Self-Renewal-Promoting Extrinsic Pathways(2019)
Authors: Stein Aerts, Pierre Vanderhaeghen
Pages: 1096 - + - GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks(2019)
Authors: Thomas Moerman, Sara Aibar Santos, Carmen Bravo González-Blas, Jaak Simm, Yves Moreau, Jan Aerts, Stein Aerts
Pages: 1 - 3