Researcher
Stein Aerts
- Disciplines (Flanders Institute for Biotechnology):Adaptive agents and intelligent robotics
- Disciplines (KU Leuven):Other biological sciences
- See also: Stein Aerts (Flanders Institute for Biotechnology)
Affiliations
- Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Responsible
From1 Oct 2009 → Today - VIB Center for AI & Computational Biology (Research Center)
Responsible
From1 Jul 2023 → Today - C20 Support (Research group)
Responsible
From1 Jul 2023 → 31 Dec 2023 - Dynamical Systems, Signal Processing and Data Analytics (STADIUS) (Division)
Member
From1 Aug 2020 → 30 Sep 2004 - Aerts Lab (Research group)
Responsible
From1 Jan 2017 → Today - Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Member
From1 Oct 2009 → Today - Department of Human Genetics (Department)
Member
From1 Oct 2005 → 30 Nov 2017
Projects
31 - 40 of 66
- Transcriptional circuitry of patterning of neural tube organoids and in vivo spinal cordFrom1 Feb 2019 → 30 Jun 2023Funding: Own budget, for example: patrimony, inscription fees, gifts
- Mapping dynamic transcription factor hierarchies using pooled CRISPR screening with single-cell epigenome readoutFrom1 Jan 2019 → 31 Dec 2022Funding: FWO research project (including WEAVE projects)
- SymBioSys: Computationally disentangling cellular heterogeneityFrom1 Oct 2018 → 30 Sep 2022Funding: Fund Recuperation Fiscal Exemption
- Integrating genetic, environmental and developmental variation to study gene regulatory mechanismsFrom18 Jun 2018 → 5 Mar 2021Funding: Own budget, for example: patrimony, inscription fees, gifts
- EXPLORING THE CODE OF LIFE: FROM DECODING TO DESIGNING CELL TYPE-SPECIFIC ENHANCERS WITH DEEP LEARNINGFrom1 May 2018 → 19 Jul 2023Funding: Own budget, for example: patrimony, inscription fees, gifts
- Single-cell omics in high throughput and at spatial resolutionFrom1 May 2018 → 30 Apr 2022Funding: FWO Medium Size Research Infrastructure
- Mapping regulatory landscapes in the Drosophila brain using single-cell microfluidsFrom11 Sep 2017 → 30 Nov 2022Funding: FWO fellowships
- Reverse engineering cellular identity at single cell resolutionFrom31 Aug 2017 → 7 Feb 2023Funding: FWO fellowships
- Decoding and controlling cell-state switching: A bottom-up approach based on enhancer logicFrom1 Jun 2017 → 31 May 2022Funding: Own budget, for example: patrimony, inscription fees, gifts
- Unravelling Single Cell Gene Regulatory Networks in DrosophilaFrom10 May 2017 → 30 Sep 2018Funding: Own budget, for example: patrimony, inscription fees, gifts
Publications
1 - 10 of 123
- Cell-type-directed design of synthetic enhancers(2024)
Authors: Katina Spanier, Niklas Kempynck, Eren Can Eksi, Koen Theunis, Valerie Christiaens, David Mauduit, Stein Aerts
- Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation(2024)
Authors: Roel Vandepoel, Valerie Christiaens, Jonas Demeulemeester, David Mauduit, Georg Halder, Stein Aerts
- SCENIC plus : single-cell multiomic inference of enhancers and gene regulatory networks(2023)
Authors: Seppe De Winter, Nikolai Hecker, Valerie Christiaens, Stein Aerts
Pages: 1355 - + - Systematic benchmarking of single-cell ATAC-sequencing protocols(2023)
Authors: Florian De Rop, Valerie Christiaens, Stein Aerts
- EXPLORING THE CODE OF LIFE: FROM DECODING TO DESIGNING CELL TYPE-SPECIFIC ENHANCERS WITH DEEP LEARNING(2023)
Authors: Ibrahim Ihsan Taskiran, Stein Aerts
- Neuronal identity defines a-synuclein and tau toxicity(2023)
Authors: Roman Praschberger, Natalie Kaempf, Eliana Nachman, Stein Aerts, Patrik Verstreken
- Shared enhancer gene regulatory networks between wound and oncogenic programs(2023)
Authors: Seppe De Winter, Georg Halder, Stein Aerts
- Emerging questions in transcriptional regulation(2023)
Authors: Stein Aerts
Pages: 247 - 251 - Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation(2023)
Authors: Filip Claes, Rob van der Kant, Mark Fiers, Stein Aerts, Frederic Rousseau, Joost Schymkowitz, Frederik De Smet
- Mitochondria metabolism sets the species-specific tempo of neuronal development(2023)
Authors: Ryohei Iwata, Pierre Casimir, Emir Erkol, Sofie Beckers, Anke Vandekeere, Pieter Vermeersch, Sebastien Carpentier, Kristofer Davie, Max Mazzone, Stein Aerts, et al.
Pages: 553 - +