Researcher
Vanessa Vermeirssen
- Keywords:biological networks, gene regulation, systems biology, bioinformatics
- Disciplines:Analysis of next-generation sequence data, Neurological and neuromuscular diseases, Single-cell data analysis, Medical epigenomics, Medical genomics, Development of bioinformatics software, tools and databases, Computational transcriptomics and epigenomics, Biological psychiatry, Computational biomodelling and machine learning, Bioinformatics data integration and network biology, Cancer biology, Medical metabolomics, Medical transcriptomics
Affiliations
- Department of Biomedical molecular biology (Department)
Member
From1 Oct 2019 → Today - Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → Today - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Mar 2007 → 30 Sep 2017 - Department of Biochemical and microbial technology (Department)
Member
From1 Oct 1999 → 30 Sep 2003
Projects
1 - 5 of 5
- Targeting radiation-induced plasticity in Glioblastoma: from fundamental insights to tailored therapeutic opportunitiesFrom1 Jan 2023 → TodayFunding: Foundations, funds and other with scientific goal
- Transposable elements-mediated gene regulatory networks of brain diseasesFrom1 Oct 2022 → TodayFunding: BOF - doctoral mandates
- Single cell network inference to characterize regulatory heterogeneity in brain cancerFrom1 Nov 2021 → 30 Apr 2023Funding: FWO fellowships
- Multi-omics data integration in the context of regulatory networks to decipher regulatory metabolites in complex diseases such as cancer and neuro-inflammatory disordersFrom1 Nov 2020 → TodayFunding: BOF - doctoral mandates
- Multi-omics data integration to elucidate the causes of complex diseasesFrom1 Mar 2020 → TodayFunding: BOF - projects
Publications
1 - 10 of 16
- HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening(2024)
Authors: Carolina de Carvalho Nunes, Jasper Anckaert, Fanny De Vloed, Jolien De Wyn, Kaat Durinck, Jo Vandesompele, Franki Speleman, Vanessa Vermeirssen
- Evaluation of single-sample network inference methods for precision oncology(2024)
Authors: Joke Deschildre, Boris Vandemoortele, Jens Uwe Loers, Katleen De Preter, Vanessa Vermeirssen
- Human iPSC modeling recapitulates in vivo sympathoadrenal development and reveals an aberrant developmental subpopulation in familial neuroblastoma(2024)
Authors: Stéphane Van Haver, Yujie Fan, Sarah-Lee Bekaert, Celine Everaert, Wouter Van Loocke, Vittorio Zanzani, Joke Deschildre, Ines Fernandez Maestre, Adrianna Amaro, Vanessa Vermeirssen, et al.
- Molecular systems biology approaches to investigate mechanisms of gut-brain communication in neurological diseases(2023)
Authors: Boris Vandemoortele, Vanessa Vermeirssen
Pages: 3622 - 3632 - Opportunities and challenges in interpretable deep learning for drug sensitivity prediction of cancer cells(2022)
Authors: Bikash Ranjan Samal, Jens Uwe Loers, Vanessa Vermeirssen, Katleen De Preter
- SUBATOMIC : a SUbgraph BAsed mulTi-OMIcs clustering framework to analyze integrated multi-edge networks(2022)
Authors: Jens Uwe Loers, Vanessa Vermeirssen
- Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA(2022)
Authors: Vanessa Vermeirssen, Jill Deleu, Annelien Morlion, Celine Everaert, Jilke De Wilde, Jasper Anckaert, Kaat Durinck, Justine Nuytens, Muhammad Rishfi, Franki Speleman, et al.
- Maximal acyclic subgraph optimization for gene regulatory networks(2022)
Authors: Kenneth Stoop, Tom Michoel, Vanessa Vermeirssen, Mario Pickavet, Pieter Audenaert, Didier Colle
Pages: 73 - 74 - Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA(2022)
Authors: Vanessa Vermeirssen, Jill Deleu, Annelien Morlion, Celine Everaert, Kimberly Verniers, Tom Van Maerken, Bram De Wilde, Jo Vandesompele, Anneleen Decock
Number of pages: 1 - Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA(2022)
Authors: Vanessa Vermeirssen, Jill Deleu, Annelien Morlion, Celine Everaert, Kimberly Verniers, Tom Van Maerken, Bram De Wilde, Jo Vandesompele, Anneleen Decock
Number of pages: 1