Researcher
Yvan Saeys
- Keywords (Ghent University):machine learning
- Disciplines (Flanders Institute for Biotechnology):Analysis of next-generation sequence data, Adaptive immunology, Bacteriology
- Disciplines (Ghent University):Machine learning and decision making, Health informatics, Single-cell data analysis, Data mining, Computational biomodelling and machine learning, Bio-informatics, Computer science
- See also: Yvan Saeys (Ghent University)
Affiliations
- Department of Applied Mathematics, Computer Science and Statistics (Department)
Member
From1 Feb 2017 → Today - Saeys Lab (Research group)
Responsible
From1 Jan 2017 → Today - Department of Internal medicine (Department)
Member
From1 Oct 2013 → 31 Jan 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From15 Jan 2001 → 30 Sep 2013
Projects
1 - 7 of 7
- Cellular and Molecular Drivers of Acute Aortic DissectionsFrom1 Jan 2023 → TodayFunding: Other international institutions, not mentioned elsewhere
- SInGle cells iN AuToimmUne inflammatoRy disEasesFrom1 Jan 2023 → TodayFunding: Other EU initiatives out of framework
- VIB Grant for Saeys Lab_Period:2022-01-01-2026-12-31From1 Jan 2022 → TodayFunding: FRI - Project driven research
- dynverse: a toolkit for studying cell development with single-cell omics (EOSS2)From1 Jul 2020 → 30 Jun 2021Funding: Other international institutions, not mentioned elsewhere
- To support the work of Niels Vandamme (PI) for the project titled COVID-Track project to conduct a COVID-Track Observational studyFrom1 May 2020 → 30 Jun 2020Funding: Other international institutions, not mentioned elsewhere
- "Identification of the Molecular Mechanisms of nonresponse to Treatments, Relapses and Remission in Autoimmune, Inflammatory, and Allergic Conditions’ — ‘3TR’"From1 Sep 2019 → TodayFunding: Other EU initiatives out of framework
- VIB Grant for Saeys Lab_Period:2017-01-01-2021-12-31From1 Jan 2017 → 31 Dec 2021Funding: FRI - Project driven research
Publications
1 - 10 of 122
- Efficient cytometry analysis with FlowSOM in python boosts interoperability with other single-cell tools.(2024)
Authors: Artuur Couckuyt, Benjamin Rombaut, Yvan Saeys, Sofie Van Gassen
Pages: btae179 - Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics.(2024)
Authors: Chananchida Sang-aram, Robin Browaeys, Ruth Seurinck, Yvan Saeys
Pages: rp88431 - A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma.(2024)
Authors: Joanna Pozniak, Dennis Pedri, Ewout Landeloos, Ada Nowosad, Niccolo Roda, Carlos Ariel Pulido Vicuna, Lotte Pollaris, Ruth Seurinck, Benjamin Rombaut, Frank Vernaillen, et al.
Pages: 166-183.e25 - SpatialData: an open and universal data framework for spatial omics.(2024)
Authors: Benjamin Rombaut, Lotte Pollaris, Yvan Saeys
Pages: e-pub - Myelodysplastic neoplasms dissected into indolent, leukaemic and unfavourable subtypes by computational clustering of haematopoietic stem and progenitor cells.(2024)
Authors: Sofie Van Gassen, Yvan Saeys
Pages: 1365-1377 - An innate immune signature induced by AS01- or AS03-adjuvanted vaccines predicts the antibody response magnitude and quality consistently over time.(2024)
Authors: Setareh Tasdighian, Yvan Saeys
Pages: 1412732 - Uncertainty-aware single-cell annotation with a hierarchical reject option.(2024)
Authors: Lauren Theunissen, Yvan Saeys
Pages: 3 - Ferroptosis and pyroptosis signatures in critical COVID-19 patients.(2023)
Authors: Samya Van Coillie, Ria Roelandt, Ruth Seurinck, Yvan Saeys
Pages: 2066-2077 - LXR signaling controls homeostatic dendritic cell maturation.(2023)
Authors: Victor Bosteels, Sandra Maréchal, Sofie Rennen, Jonathan Maelfait, Simon Tavernier, Jessica Vetters, Julie Van Duyse, Cédric Bosteels, Ria Roelandt, Annelies Emmaneel, et al.
Pages: eadd3955 - Gut Inflammation in Axial Spondyloarthritis Patients is Characterized by a Marked Type 17 Skewed Mucosal Innate-like T Cell Signature.(2023)
Authors: Céline Mortier, Katrien Quintelier, Ann-Sophie De Craemer, Thomas Renson, Liselotte Deroo, Emilie Dumas, Zuzanna Lukasik, Sofie Van Gassen, Yvan Saeys, Filip Van den Bosch, et al.
Pages: 1969-1982