Onderzoeker
Assia Saltykova
- Disciplines:Publieke medische diensten, Bio-informatica en computationele biologie, Maatschappelijke gezondheidszorg, Scientific computing, Biomechanische ingenieurswetenschappen, Industriële biotechnologie, Biomateriaal engineering, Milieu ingenieurswetenschappen en biotechnologie, Andere biotechnologie, bio-en biosysteem ingenieurswetenschappen, Biologische systeemtechnologie, Plantenbiologie, Andere (bio)medische ingenieurswetenschappen, Engineering van biomaterialen
Affiliaties
- Vakgroep Plantenbiotechnologie en Bio-informatica (Departement)
Lid
Vanaf25 apr 2016 → 25 sep 2022
Publicaties
1 - 10 van 10
- Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety(2022)
Auteurs: Assia Saltykova
- Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak(2021)
Auteurs: Florence Buytaers, Assia Saltykova, Wesley Mattheus, Valeska Laisnez, Bavo Verhaegen, Nancy H. C. Roosens, Kevin Vanneste, Naiima Hammami, Brigitte Pochet, Vera Cantaert, et al.
- Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies(2021)
Auteurs: Florence Buytaers, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Pierard, Kathleen Marchal, Sigrid C. J. De Keersmaecker
- Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study(2020)
Auteurs: Assia Saltykova, Florence Buytaers, Sarah Denayer, Bavo Verhaegen, Denis Piérard, Nancy H. C. Roosens, Kathleen Marchal, Sigrid C. J. De Keersmaecker
- A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine(2020)
Auteurs: Florence Buytaers, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal, Sigrid C. J. De Keersmaecker
- Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus(2020)
Auteurs: Bas Berbers, Assia Saltykova, Cristina Garcia-Graells, Patrick Philipp, Fabrice Arella, Kathleen Marchal, Raf Winand, Kevin Vanneste, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker
- Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing : Neisseria meningitidis as a proof of concept(2019)
Auteurs: Assia Saltykova, Wesley Mattheus, Sophie Bertrand, Nancy HC Roosens, Kathleen Marchal, Sigrid CJ De Keersmaecker
- The Chara genome : secondary complexity and implications for plant terrestrialization(2018)
Auteurs: Tomoaki Nishiyama, Hidetoshi Sakayama, Jan de Vries, Henrik Buschmann, Denis Saint-Marcoux, Kristian K Ullrich, Fabian B Haas, Lisa Vanderstraeten, Dirk Becker, Daniel Lang, et al.
Pagina's: 448 - 464 - Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-(2018)
Auteurs: Assia Saltykova, Véronique Wuyts, Wesley Mattheus, Sophie Bertrand, Nancy HC Roosens, Kathleen Marchal, Sigrid De Keersmaecker
- Identifying prokaryotic consortia that live in close interactions with algae(2015)Volume: 50
Auteurs: Assia Saltykova, Sergio Pulido-Tamayo, Marie Pazoutova, Stefan A Rensing, Tomoaki Nishiyama, Yves Van de Peer, Kathleen Marchal, Stephane Rombauts
Pagina's: 145 - 146