- Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches(2022)
Auteurs: Martin Guilliams, Johnny Bonnardel, Birthe Haest, Bart Vanderborght, Camille Wagner, Anneleen Remmerie, Anna Bujko, Liesbet Martens, Tinne Thoné, Federico Francesco De Ponti, et al.
Pagina's: 379 - 396
- Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition(2022)
Auteurs: Johannes Bues, Marjan Biocanin, Joern Pezoldt, Riccardo Dainese, Antonius Chrisnandy, Saba Rezakhani, Wouter Saelens, Vincent Gardeux, Revant Gupta, Rita Sarkis, et al.
Pagina's: 323 - 330
- CD8 memory precursor cell generation is a continuous process(2022)
Auteurs: Helena Todorov, Margaux Prieux, Daphne Laubreton, Matteo Bouvier, Shaoying Wang, Simon de Bernard, Christophe Arpin, Wouter Saelens, Arnaud Bonnaffoux, Olivier Gandrillon, et al.
- Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells(2021)
Auteurs: Wouter Saelens, Louise Deconinck, Yvan Saeys
- A scalable SCENIC workflow for single-cell gene regulatory network analysis(2020)
Auteurs: Bram van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Wouter Saelens, Quentin Rouchon, Toni Verbeiren, Dries De Maeyer, et al.
Pagina's: 2247 - 2276
- NicheNet : modeling intercellular communication by linking ligands to target genes(2020)
Auteurs: Robin Browaeys, Wouter Saelens, Yvan Saeys
Pagina's: 159 - 162
- TinGa : fast and flexible trajectory inference with Growing Neural Gas(2020)
Auteurs: Helena Todorov, Wouter Saelens, Yvan Saeys
Pagina's: 66 - 74
- Trajectory-based differential expression analysis for single-cell sequencing data(2020)
Auteurs: Koen Van den Berge, Hector Roux de Bézieux, Kelly Street, Wouter Saelens, Robrecht Cannoodt, Yvan Saeys, Sandrine Dudoit, Lieven Clement
- Network inference from single-cell transcriptomic data(2019)
Series: Methods in Molecular Biology
Auteurs: Helena Todorov, Robrecht Cannoodt, Wouter Saelens, Yvan Saeys
Pagina's: 235 - 249
- Essential guidelines for computational method benchmarking(2019)
Auteurs: Lukas M Weber, Wouter Saelens, Robrecht Cannoodt, Charlotte Soneson, Alexander Hapfelmeier, Paul P Gardner, Anne-Laure Boulesteix, Yvan Saeys, Mark D Robinson