Onderzoeker
Koen Van den Berge
- Disciplines:Biostatistiek, Ontwikkeling van bio-informatica software, tools en databases, Single-cell data analyse, Analyse van next-generation sequence data
Affiliaties
- Vakgroep Toegepaste Wiskunde, Informatica en Statistiek (Departement)
Lid
Vanaf8 okt 2014 → 15 jul 2023
Projecten
1 - 2 of 2
- Verhoogde resolutie voor differentiële expressie analyse in single-cell RNA-seq dataVanaf1 nov 2019 → 15 jul 2023Financiering: FWO junior postdoctoraal mandaat
- Wavelet gebaseerde functionele modellen voor de analyse van next generation sequencing dataVanaf1 jan 2016 → 31 okt 2019Financiering: FWO Strategische Onderzoeksbeurs
Publicaties
1 - 10 van 17
- Polar lake microbiomes have distinct evolutionary histories(2023)
Auteurs: Bjorn Tytgat, Elie Verleyen, Maxime Sweetlove, Koen Van den Berge, Eveline Pinseel, Dominic A. Hodgson, Steven L. Chown, Koen Sabbe, Annick Wilmotte, Anne Willems, et al.
- A multimodal cell census and atlas of the mammalian primary motor cortex(2021)
Auteurs: Edward M. Callaway, Hong-Wei Dong, Joseph R. Ecker, Michael J. Hawrylycz, Z. Josh Huang, Ed S. Lein, John Ngai, Pavel Osten, Bing Ren, Andreas Savas Tolias, et al.
Pagina's: 86 - 102 - satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications(2021)
Auteurs: Jeroen Gilis, Kristoffer Vitting-Seerup, Koen Van den Berge, Lieven Clement
- Altering the sex pheromone cyclo(L-Pro-L-Pro) of the diatom Seminavis robusta towards a chemical probe(2021)
Auteurs: Eli Bonneure, Amber De Baets, Sam De Decker, Koen Van den Berge, Lieven Clement, Wim Vyverman, Sven Mangelinckx
- Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta(2021)
Auteurs: Gust Bilcke, Koen Van den Berge, Sam De Decker, Nicole Poulsen, Petra Bulánková, Cristina Maria Osuna Cruz, Jack Dickenson, Koen Sabbe, Georg Pohnert, Klaas Vandepoele, et al.
Pagina's: 562 - 576 - A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex(2021)
Auteurs: Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew I. Aldridge, Seth A. Ament, Anna Bartlett, M. Margarita Behrens, Koen Van den Berge, et al.
Pagina's: 103 - 110 - Trajectory-based differential expression analysis for single-cell sequencing data(2020)
Auteurs: Koen Van den Berge, Hector Roux de Bézieux, Kelly Street, Wouter Saelens, Robrecht Cannoodt, Yvan Saeys, Sandrine Dudoit, Lieven Clement
- Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia(2020)
Auteurs: David H. Brann, Tatsuya Tsukahara, Caleb Weinreb, Marcela Lipovsek, Koen Van den Berge, Boying Gong, Rebecca Chance, Iain C. Macaulay, Hsin-Jung Chou, Russell B. Fletcher, et al.
- Distinctive growth and transcriptional changes of the diatom Seminavis robusta in response to quorum sensing related compounds(2020)
Auteurs: Frederike Stock genannt Schroer, Gust Bilcke, Sam De Decker, Cristina Maria Osuna Cruz, Koen Van den Berge, Emmelien Vancaester, Lieven De Veylder, Klaas Vandepoele, Wim Vyverman
- RNA sequencing data : hitchhiker's guide to expression analysis(2019)
Auteurs: Koen Van den Berge, Katharina M Hembach, Charlotte Soneson, Simone Tiberi, Lieven Clement, Michael I Love, Rob Patro, Mark D Robinson
Pagina's: 139 - 173