- The Plant PTM Viewer, a central resource for exploring plant protein modifications(2019)
Auteurs: Patrick Willems, Thomas Van Parys, Sofie Goormachtig, Ive De Smet, Alexander Botzki, Frank Van Breusegem, Kris Gevaert
Pagina's: 752 - 762
- Optimising orbit counting of arbitrary order by equation selection(2019)
Auteurs: Ine Melckenbeeck, Pieter Audenaert, Thomas Van Parys, Yves Van de Peer, Didier Colle, Mario Pickavet
- MorphDB : prioritizing genes for specialized metabolism pathways and gene ontology categories in plants(2018)
Auteurs: Arthur Zwaenepoel, Tim Diels, David Amar, Thomas Van Parys, Ron Shamir, Yves Van de Peer, Oren Tzfadia
- A Cytoscape app for motif enumeration with ISMAGS(2017)
Auteurs: Thomas Van Parys, Ine Melckenbeeck, Maarten Houbraken, Pieter Audenaert, Didier Colle, Mario Pickavet, Piet Demeester, Yves Van de Peer
Pagina's: 461 - 463
- hfAIM: a reliable bioinformatics approach for in silico genome-wide identification of autophagy-associated Atg8-interacting motifs in various organisms(2016)
Auteurs: Qingjun Xie, Oren Tzfadia, Matan Levy, Efrat Weithorn, Hadas Peled-Zehavi, Thomas Van Parys, Yves Van de Peer, Gad Galili
Pagina's: 876 - 887
- Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks(2016)
Auteurs: Sofie Van Landeghem, Thomas Van Parys, Marieke Dubois, Dirk Inzé, Yves Van de Peer
- Top 10 metrics for life science software good practices(2016)
Auteurs: Haydee Artaza, Neil Chue Hong, Manuel Corpas, Angel Corpuz, Rob Hooft, Rafael C Jiménez, Brane Leskosek, Brett G Olivier, Jan Stourac, Radka Svobodová Vareková, et al.
- Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress(2014)
Auteurs: Vanessa Vermeirssen, Inge De Clercq, Thomas Van Parys, Frank Van Breusegem, Yves Van de Peer
Pagina's: 4656 - 4679
- GenomeView : a next-generation genome browser(2012)
Auteurs: Thomas Abeel, Thomas Van Parys, Yvan Saeys, James Galagan, Yves Van de Peer
- U-Compare bio-event meta-service : compatible BioNLP event extraction services(2011)
Auteurs: Yoshinobu Kano, Jari Bjorne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, Kevin Cohen, Karin Verspoor, Christophe Roeder, Lawrence Hunter, et al.
