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Does an agroecological approach impact the nematode biological and functional diversity in intensive protected production systems? Research Institute for Agriculture, Fisheries and Food

Lieven Waeyenberge, Dieter Slos, Thibault Devolder, Koen Willekens, Fabio Tittarelli

Food production systems in protected conditions are probably the most intensive agricultural systems causing biodiversity loss. Experimental sites in different European areas were established to investigate whether an agroecological approach to organic greenhouse production allows preserving or increasing biodiversity. Soil nematode communities were characterized by DNA-metabarcoding, and some biodiversity indices were calculated. A general increase in absolute number of genera indicates that the innovative treatments potentially positively influence biodiversity. A multidimensional analysis ...

Supplementary material 8 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

Non-metric multidimensional scaling (NMDS) ordinations

Supplementary material 7 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

Maximum Likelihood tree of the 100 most dominant ASVs

Supplementary material 5 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

Read distribution amongst nematode families across the different types of vegetation

Supplementary material 3 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

Proportions of total ASVs assigned to various nematode families including those unassigned at the family level across all samples

Supplementary material 9 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

NMDS plots of samples and taxa at the species level

Supplementary material 4 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

Vegetation types

Supplementary material 2 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

Relative abundance of ASVs

Supplementary material 1 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

Sampling data

Supplementary material 6 from: Ahmed M, Slos D, Holovachov O (2024) Assessing the diversity of nematodes in the Store Mosse National Park (Sweden) using metabarcoding. Metabarcoding and Metagenomics 8: e111307. https://doi.org/10.3897/mbmg.8.111307 Research Institute for Agriculture, Fisheries and Food

Mohammed Ahmed, Dieter Slos, Oleksandr Holovachov

Maximum Likelihood tree of the 100 most dominant ASVs