Researcher
Filip Van Nieuwerburgh
- Keywords:Massively parallel sequencing, Applied bioinformatics
- Disciplines:Pharmogenetics and -genomics, Genetics, Epigenetics, Immunogenetics
Affiliations
- Department of Pharmaceutics (Department)
Member
From1 Sep 1999 → Today
Infrastructure
1 - 1 of 1
- PromethION: nanopore sequencer for DNA and RNA sequencing (Consortium coordinator)
Projects
11 - 20 of 26
- PromethION: nanopore sequencer for DNA and RNA sequencing with long reading length, high reliability, and high, flexible, real-time throughput to enable fast decoding of (epi) genomes and (epi) transcriptomesFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
- Covid-Track: applying quantitative virology and single-cell genomics to unravel the virus-host interactions leading to severe immunopathologies in COVID-19 patientsFrom15 Apr 2020 → 14 Apr 2021Funding: BOF - projects
- Identification of adaptive mechanisms leading to reduced antibiotic susceptibility in bacterial biofilms using experimental evolution and machine learning approachesFrom1 Jan 2020 → TodayFunding: BOF - projects
- Characterization of extracellular RNA-signals and their role in antiviral immunity in insectsFrom1 Jan 2019 → 31 Dec 2022Funding: FWO research project (including WEAVE projects)
- Lab-on-a-Chip (LoC) for forensic STR profiling.From1 Oct 2018 → 30 Sep 2022Funding: BOF - Doctoral projects
- PromethION: nanopore sequencer for high-throughput and long read high-fidelity DNA and RNA sequencing allowing fast decoding of (epi)genomes and (epi)transcriptomesFrom1 Jun 2018 → 31 May 2020Funding: BOF - Other initiatives
- Fetal cell isolation and characterization for cell-based non-invasive prenatal genetic diagnosisFrom1 Oct 2017 → 30 Sep 2021Funding: BOF - Doctoral projects
- Study of the interactions between the hepatitis E virus and its hostFrom1 Oct 2017 → 30 Sep 2021Funding: BOF - Doctoral projects
- Sequencing Expertise Centre (Life Sciences)From1 Feb 2017 → 30 Nov 2022Funding: BOF - Doctoral projects
- Fetal cell isolation and characterization for cell-based non-invasive prenatal genetic diagnosis.From1 Jan 2017 → 31 Oct 2022Funding: BOF - Doctoral projects
Publications
1 - 10 of 274
- Applications of nanopore sequencing for forensic analysis(2024)
Authors: Olivier Tytgat, Filip Van Nieuwerburgh
Pages: 85 - 98 - Osteopontin characterizes bile duct-associated macrophages and correlates with liver fibrosis severity in primary sclerosing cholangitis(2024)
Authors: Kevin De Muynck, Lander Heyerick, Federico Francesco De Ponti, Bart Vanderborght, Tim Meese, Sanne Van Campenhout, Leen Baudonck, Eva Gijbels, Pedro M. Rodrigues, Jesus M. Banales, et al.
Pages: 269 - 288 - Post-feeding transcriptomics reveals essential genes expressed in the midgut of the desert locust(2023)
Authors: Joachim Van Lommel, Michiel Holtof, Laurentijn Tilleman, Dorien Cools, Seppe Vansteenkiste, Daria Polgun, Rik Verdonck, Filip Van Nieuwerburgh, Jozef Vanden Broeck
- Single-cell profiling identifies a novel human polyclonal unconventional T cell lineage(2023)
Authors: Lore Billiet, Laurenz De Cock, Guillem Sanchez Sanchez, Rupert Mayer, Glenn Goetgeluk, Stijn De Munter, Melissa Pille, Joline Ingels, Hanne Jansen, Karin Weening, et al.
- New insights into the combined toxicity of aflatoxin B1 and fumonisin B1 in HepG2 cells using Seahorse respirometry analysis and RNA transcriptome sequencing(2023)
Authors: Xiangrong Chen, Mohamed Fathi Abdallah Abdelmohsen, Charlotte Grootaert, Filip Van Nieuwerburgh, Andreja Rajkovic
- Targeted haplotyping in pharmacogenomics using Oxford Nanopore Technologies' adaptive sampling(2023)
Authors: Koen Deserranno, Laurentijn Tilleman, Kaat Rubben, Dieter Deforce, Filip Van Nieuwerburgh
- Comparative transcriptomics of porcine liver-resident CD8αdim, liver CD8αhigh and circulating blood CD8αhigh NK cells reveals an intermediate phenotype of liver CD8αhigh NK cells(2023)
Authors: Leen Hermans, Sofie Denaeghel, Robert J. J. Jansens, Steffi De Pelsmaeker, Filip Van Nieuwerburgh, Dieter Deforce, Everardo Hegewisch-Solloa, Emily M. Mace, Eric Cox, Bert Devriendt, et al.
- Dynamics of training and acute exercise-induced shifts in muscular glucose transporter (GLUT) 4, 8, and 12 expression in locomotion versus posture muscles in healthy horses(2023)
Authors: Carmen Vidal Moreno de Vega, Diete Lemmens, Constance de Meeus d'Argenteuil, Berit Boshuizen, Lorie De Maré, Luc Leybaert, Klara Goethals, Jean Eduardo de Oliveira, Guilherme Hosotani, Dieter Deforce, et al.
- Identification and profiling of a novel Bombyx mori latent virus variant acutely infecting Helicoverpa armigera and Trichoplusia ni(2023)
Authors: Thomas-Wolf Verdonckt, Anton Bilsen, Filip Van Nieuwerburgh, Loes De Troij, Dulce Santos, Jozef Vanden Broeck
- Cathepsin-L secreted by high-quality bovine embryos exerts an embryotrophic effect in vitro(2023)
Authors: Annelies Raes, Eline Wydooghe, Krishna Pavani, Osvaldo Américo Bogado Pascottini, Katleen Van Steendam, Maarten Dhaenens, Sonia Heras, Luc Peelman, Dieter Deforce, Filip Van Nieuwerburgh, et al.
Patents
1 - 2 of 2
- Hydrolysis-based probe and method for STR genotyping (Inventor)
- Probe and method for STR-genotyping (Inventor)