Researcher
Filip Van Nieuwerburgh
- Keywords:Massively parallel sequencing, Applied bioinformatics
- Disciplines:Pharmogenetics and -genomics, Genetics, Epigenetics, Immunogenetics
Affiliations
- Department of Pharmaceutics (Department)
Member
From1 Sep 1999 → Today
Infrastructure
1 - 1 of 1
- PromethION: nanopore sequencer for DNA and RNA sequencing (Consortium coordinator)
Projects
1 - 10 of 26
- Unraveling the role of the immune system in the development of exuberant granulation tissue in horse woundsFrom1 Jan 2024 → TodayFunding: BOF - doctoral mandates
- Extracellular vesicles from follicular fluid are key for successful development of fresh and vitrified equine oocytesFrom16 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- qPCR system for NGS library quality control, gene expression measurement, hybridization curve, and melting curve analysisFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Cofunding core facility - Ghent Light Microscopy (GLiM)From1 Jul 2022 → TodayFunding: BOF - research organisations
- Cofunding core facility - UGent NGS CoreFrom1 Jul 2022 → TodayFunding: BOF - research organisations
- Modular high-end mass spectrometer for ultrasensitive quantification and imaging of small organic molecules in cross-health research - MSsmall-XHFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Empirical exploration of novel DNA probes for hybridization to tandem repeatsFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Nanopore sequencing of complete pharmacogenes after CRISPR/Cas9 enrichment in tamoxifen and clopidogrel patients allowing enhanced haplotyping and continuous scale machine learning efficacy prediction.From1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- PEA histone modification proteomicsFrom1 Mar 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Stimulated emission depletion microscopy (STED): Nanoscopy for innovative research in the life sciencesFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
Publications
191 - 200 of 274
- Differential transcriptome analysis of the common shrimp Crangon crangon: special focus on the nuclear receptors and RNAi-related genes(2015)
Authors: Olivier Christiaens, Daan Delbare, Christophe Van Neste, Na Yu, Ruben De Wilde, Filip Van Nieuwerburgh, Dieter Deforce, Kris Cooreman, Guy Smagghe
Pages: 163 - 177 - Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method(2015)
Authors: Lieselot Deleye, Dieter De Coninck, CHRISTODOULOS CHRISTODOULOU, Tom Sante, Annelies Dheedene, Dieter Deforce, Filip Van Nieuwerburgh
- Viral small-RNA analysis of Bombyx mori larval midgut during persistent and pathogenic cytoplasmic polyhedrosis virus infection(2015)
Authors: Aris Zografidis, Filip Van Nieuwerburgh, Anna Kolliopoulou, Konstantinos Apostolou-Karampelis, Steven R Head, Dieter Deforce, Guy Smagghe, Luc Swevers
Pages: 11473 - 11486 - A doubling of microphytobenthos biomass coincides with a tenfold increase in denitrifier and total bacterial abundances in intertidal sediments of a temperate estuary(2015)
Authors: Helen Decleyre, Kim Heylen, Koen Sabbe, Bjorn Tytgat, Dieter Deforce, Filip Van Nieuwerburgh, Carl Van Colen
- Validation of a sensitive DNA walking strategy to characterise unauthorised GMOs using model food matrices mimicking common rice products(2015)
Authors: Marie-Alice Fraiture, Philippe Herman, Isabel Taverniers, Marc De Loose, Filip Van Nieuwerburgh, Dieter Deforce, Nancy H. Roosens
Pages: 1259 - 1265 - 16S rRNA Amplicon sequencing demonstrates that indoor-reared bumblebees (Bombus terrestris) harbor a core subset of bacteria normally associated with the wild host(2015)
Authors: Ivan Meeus, Annelies Billiet, Filip Van Nieuwerburgh, Dieter Deforce, Felix Wäckers, Peter Vandamme, Guy Smagghe
- Whole exome sequencing as a novel tool for the detection of modifier genes in Pseudoxanthoma elasticum(2015)Volume: 23
Authors: Eva De Vilder, Filip Van Nieuwerburgh, Dieter Deforce, Ludovic Martin, Georges Lefthériotis, Paul Coucke, Anne De Paepe, Olivier Vanakker
Pages: 106 - 107 - An heuristic filtering tool to identify phenotype-associated genetic variants applied to human intellectual disability and canine coat colors(2015)
Authors: Bart Broeckx, Frank Coopman, Geert Verhoeven, Tim Bosmans, Ingrid Gielen, Walter Dingemanse, Dieter Deforce, Filip Van Nieuwerburgh
- Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes(2015)
Authors: Bart Broeckx, Christophe Hitte, Frank Coopman, Geert Verhoeven, Sarah De Keulenaer, Ellen De Meester, Thomas Derrien, Jessica Alfoldi, Kerstin Lindblad-Toh, Tim Bosmans, et al.
- Whole exome sequencing the dog(2015)
Authors: Bart Broeckx, Christophe Hitte, Frank Coopman, Geert Verhoeven, Sarah De Keulenaer, Ellen De Meester, Thomas Derrien, Jessica Alfoldi, Kerstin Lindblad-Toh, Tim Bosmans, et al.
Pages: 78 - 78
Patents
1 - 2 of 2
- Hydrolysis-based probe and method for STR genotyping (Inventor)
- Probe and method for STR-genotyping (Inventor)