Researcher
Stein Aerts
- Disciplines (Flanders Institute for Biotechnology):Adaptive agents and intelligent robotics
- Disciplines (KU Leuven):Other biological sciences
- See also: Stein Aerts (Flanders Institute for Biotechnology)
Affiliations
- Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Responsible
From1 Oct 2009 → Today - VIB Center for AI & Computational Biology (Research Center)
Responsible
From1 Jul 2023 → Today - C20 Support (Research group)
Responsible
From1 Jul 2023 → 31 Dec 2023 - Dynamical Systems, Signal Processing and Data Analytics (STADIUS) (Division)
Member
From1 Aug 2020 → 30 Sep 2004 - Aerts Lab (Research group)
Responsible
From1 Jan 2017 → Today - Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Member
From1 Oct 2009 → Today - Department of Human Genetics (Department)
Member
From1 Oct 2005 → 30 Nov 2017
Projects
1 - 10 of 66
- Understanding gene regulation in a whole animal: From building a regulatory atlas to decoding gene regulation with deep learningFrom10 Jan 2024 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- SpaceTimeOmics: combining high-throughput spatial omics with AI to model gene regulation in space and timeFrom1 Jan 2024 → TodayFunding: FWO research project (including WEAVE projects)
- Interpretation of genomic regulatory variation in the human brain and Parkinson’s Disease by integrating deep learning with single-cell multi-omicsFrom1 Oct 2023 → TodayFunding: FWO junior postdoctoral fellowship
- Deep learning based synthetic design and massively parallel reporter assays to characterize and exploit cell type specific enhancersFrom1 Oct 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Enhancer-AI: AI-driven modelling and design of cell type specific enhancers for gene therapyFrom1 Oct 2023 → TodayFunding: FWO Strategic Basic Research (SBO)
- Deep learning solutions for deciphering gene regulation in the human brainFrom7 Mar 2023 → TodayFunding: FWO Strategic Basic Research Grant
- Applications of deep learning for cancer genomicsFrom1 Jan 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Evolution of the genomic regulatory code underlying neuronal diversityFrom1 Oct 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- SymBioSys: Computationally mapping genomic heterogeneity from long read sequencing dataFrom1 Oct 2022 → TodayFunding: BOF - projects
- A whole-organism approach to uncover gene regulatory mechanisms in Drosophila melanogaster: towards a regulatory map at single-cell resolutionFrom1 Oct 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
Publications
41 - 50 of 123
- Neuronal cell types in the fly: single-cell anatomy meets single-cell genomics(2019)
Authors: Jasper Janssens, Stein Aerts
Pages: 125 - 134 - Computational methods to unravel perturbed transcriptional regulation in cancer(2019)
Authors: Bram Van de Sande, Stein Aerts
- cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data(2019)
Authors: Liesbeth Minnoye, Dafni Papasokrati, Valerie Christiaens, Kristofer Davie, Jasper Wouters, Stein Aerts
Pages: 397 - + - Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation(2019)
Authors: Jasper Wouters, Stein Aerts
Pages: 637 - + - Establishment of the mayfly Cloeon dipterum as a new model system to investigate insect evolution(2019)
Authors: Kristofer Davie, Stein Aerts
- A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA plus and total RNA sequencing(2018)
Authors: Simon Bornschein, Charles De Bock, Stein Aerts, Jan Cools
Pages: E585 - E589 - A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain(2018)
Authors: Kristofer Davie, Jasper Janssens, Uli Pech, Valerie Christiaens, Carmen Bravo González-Blas, Katina Spanier, Thomas Moerman, Sarah Geurs, Thierry Voet, Jeroen Lammertyn, et al.
Pages: 982 - 998 - Toward Minimal Residual Disease-Directed Therapy in Melanoma(2018)
Authors: Aljosja Rogiers, Michael Dewaele, Panagiotis Karras, Daniel Brown, Maria Debiec-Rychter, Carmen Adriaens, Oliver Bechter, Joost van den Oord, Thierry Voet, Stein Aerts, et al.
Pages: 843 - + - Amniotic ectoderm expansion in mouse occurs via distinct modes and requires SMAD5-mediated signalling (vol 145, dev157222, 2018)(2018)
Authors: Mariya P Dobreva, Vanesa Abon Escalona, Kirstie A Lawson, Marina N Sanchez, Ljuba Ponomarev, Paulo NG Pereira, Agata Stryjewska, Nathan Criem, Danny Huylebroeck, Susana M Chuva de Sousa Lopes, et al.
- Phenotype molding of stromal cells in the lung tumor microenvironment(2018)
Authors: Diether Lambrechts, Els Wauters, Bram Boeckx, David Nittner, Ayse Bassez, Andreas Pircher, Birgit Weynand, Erik Verbeken, Paul De Leyn, Adrian Liston, et al.
Pages: 1277 - +