Researcher
Stein Aerts
- Disciplines (Flanders Institute for Biotechnology):Adaptive agents and intelligent robotics
- Disciplines (KU Leuven):Other biological sciences
- See also: Stein Aerts (Flanders Institute for Biotechnology)
Affiliations
- Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Responsible
From1 Oct 2009 → Today - VIB Center for AI & Computational Biology (Research Center)
Responsible
From1 Jul 2023 → Today - C20 Support (Research group)
Responsible
From1 Jul 2023 → 31 Dec 2023 - Dynamical Systems, Signal Processing and Data Analytics (STADIUS) (Division)
Member
From1 Aug 2020 → 30 Sep 2004 - Aerts Lab (Research group)
Responsible
From1 Jan 2017 → Today - Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Member
From1 Oct 2009 → Today - Department of Human Genetics (Department)
Member
From1 Oct 2005 → 30 Nov 2017
Projects
11 - 20 of 66
- Mapping gene regulatory networks in the era of single-cell multi-omicsFrom1 Sep 2022 → TodayFunding: BOF - doctoral mandates
- Modeling gene regulation through end-to-end deep learning for expression predictionFrom1 Sep 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Integration of long read genome sequencing and single-cell multi-omics to identify genetic variation underlying Parkinson’s diseaseFrom1 Sep 2022 → TodayFunding: BOF - doctoral mandates
- Rebus EsperFrom29 Jun 2022 → TodayFunding: Other federal scientific institutions
- Advanced infrastructure for fabrication of next-generation micro- and nanosystemsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Cell-cell cOmmuNicaTion As a driver of Cancer cell state identiTy - Decoding the impact of cell-cell communications on the identity of tumor states in skin cancersFrom1 Jan 2022 → TodayFunding: FWO EOS
- Unravelling the regulatory code orchestrating neural circuit formationFrom5 Oct 2021 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Deciphering the evolution of gene regulatory networks and enhancer architectures in neuronal cell types using single-cell deep learning and comparative genomicsFrom1 Oct 2021 → TodayFunding: FWO senior postdoctoral fellowship
- OncoAI - a machine-learning framework to predict cancer cell vulnerability at the gene-regulatory levelFrom1 Mar 2021 → TodayFunding: Foundations, funds and other with scientific goal
- Resolving the gene-regulatory dimension of the Fly Cell Atlas using single-cell multi-omics and deep learningFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
Publications
1 - 10 of 123
- Cell-type-directed design of synthetic enhancers(2024)
Authors: Katina Spanier, Niklas Kempynck, Eren Can Eksi, Koen Theunis, Valerie Christiaens, David Mauduit, Stein Aerts
- Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation(2024)
Authors: Roel Vandepoel, Valerie Christiaens, Jonas Demeulemeester, David Mauduit, Georg Halder, Stein Aerts
- SCENIC plus : single-cell multiomic inference of enhancers and gene regulatory networks(2023)
Authors: Seppe De Winter, Nikolai Hecker, Valerie Christiaens, Stein Aerts
Pages: 1355 - + - Systematic benchmarking of single-cell ATAC-sequencing protocols(2023)
Authors: Florian De Rop, Valerie Christiaens, Stein Aerts
- EXPLORING THE CODE OF LIFE: FROM DECODING TO DESIGNING CELL TYPE-SPECIFIC ENHANCERS WITH DEEP LEARNING(2023)
Authors: Ibrahim Ihsan Taskiran, Stein Aerts
- Neuronal identity defines a-synuclein and tau toxicity(2023)
Authors: Roman Praschberger, Natalie Kaempf, Eliana Nachman, Stein Aerts, Patrik Verstreken
- Shared enhancer gene regulatory networks between wound and oncogenic programs(2023)
Authors: Seppe De Winter, Georg Halder, Stein Aerts
- Emerging questions in transcriptional regulation(2023)
Authors: Stein Aerts
Pages: 247 - 251 - Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation(2023)
Authors: Filip Claes, Rob van der Kant, Mark Fiers, Stein Aerts, Frederic Rousseau, Joost Schymkowitz, Frederik De Smet
- Mitochondria metabolism sets the species-specific tempo of neuronal development(2023)
Authors: Ryohei Iwata, Pierre Casimir, Emir Erkol, Sofie Beckers, Anke Vandekeere, Pieter Vermeersch, Sebastien Carpentier, Kristofer Davie, Max Mazzone, Stein Aerts, et al.
Pages: 553 - +