Researcher
Stein Aerts
- Disciplines (Flanders Institute for Biotechnology):Adaptive agents and intelligent robotics
- Disciplines (KU Leuven):Other biological sciences
- See also: Stein Aerts (Flanders Institute for Biotechnology)
Affiliations
- Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Responsible
From1 Oct 2009 → Today - VIB Center for AI & Computational Biology (Research Center)
Responsible
From1 Jul 2023 → Today - C20 Support (Research group)
Responsible
From1 Jul 2023 → 31 Dec 2023 - Dynamical Systems, Signal Processing and Data Analytics (STADIUS) (Division)
Member
From1 Aug 2020 → 30 Sep 2004 - Aerts Lab (Research group)
Responsible
From1 Jan 2017 → Today - Laboratory of Computational Biology (VIB-KU Leuven) (Division)
Member
From1 Oct 2009 → Today - Department of Human Genetics (Department)
Member
From1 Oct 2005 → 30 Nov 2017
Projects
1 - 10 of 66
- Understanding gene regulation in a whole animal: From building a regulatory atlas to decoding gene regulation with deep learningFrom10 Jan 2024 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- SpaceTimeOmics: combining high-throughput spatial omics with AI to model gene regulation in space and timeFrom1 Jan 2024 → TodayFunding: FWO research project (including WEAVE projects)
- Interpretation of genomic regulatory variation in the human brain and Parkinson’s Disease by integrating deep learning with single-cell multi-omicsFrom1 Oct 2023 → TodayFunding: FWO junior postdoctoral fellowship
- Deep learning based synthetic design and massively parallel reporter assays to characterize and exploit cell type specific enhancersFrom1 Oct 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Enhancer-AI: AI-driven modelling and design of cell type specific enhancers for gene therapyFrom1 Oct 2023 → TodayFunding: FWO Strategic Basic Research (SBO)
- Deep learning solutions for deciphering gene regulation in the human brainFrom7 Mar 2023 → TodayFunding: FWO Strategic Basic Research Grant
- Applications of deep learning for cancer genomicsFrom1 Jan 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Evolution of the genomic regulatory code underlying neuronal diversityFrom1 Oct 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- SymBioSys: Computationally mapping genomic heterogeneity from long read sequencing dataFrom1 Oct 2022 → TodayFunding: BOF - projects
- A whole-organism approach to uncover gene regulatory mechanisms in Drosophila melanogaster: towards a regulatory map at single-cell resolutionFrom1 Oct 2022 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
Publications
91 - 100 of 123
- Mismatch repair deficiency endows tumors with a unique mutation signature and sensitivity to DNA double-strand breaks(2014)
Authors: Hui Zhao, Bernard Thienpont, Matthieu Moisse, Xavier Sagaert, Stefanie Schrauwen, Dominiek Smeets, Gert Matthijs, Stein Aerts, Jan Cools, Frédéric Amant, et al.
- iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections(2014)
Authors: Annelien Verfaillie, Hana Imrichova, Bram Van de Sande, Laura Standaert, Marina Naval Sanchez, Delphine Potier, Dmitry Svetlichnyy, Zeynep Kalender Atak, Mark Fiers, Chris Marine, et al.
- Identification of cis-regulatory modules encoding temporal dynamics during development(2014)
Authors: Delphine Potier, Stein Aerts
Pages: 534 - Male-Specific Fruitless Isoforms Target Neurodevelopmental Genes to Specify a Sexually Dimorphic Nervous System(2014)
Authors: Bram Van de Sande, Stein Aerts
Pages: 229 - 241 - Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia(2013)
Authors: Zeynep Kalender Atak, Kim De Keersmaecker, Ellen Geerdens, Anne Uyttebroeck, Peter Vandenberghe, Jan Cools, Stein Aerts
- Alteration of the microRNA network during the progression of Alzheimer's disease(2013)
Authors: Pierre Lau Poui Cheung, Evgenia Salta, Annerieke Sierksma, Amantha Thathiah, Smaragda Papadopoulou, Stein Aerts, Bart De Strooper
Pages: 1613 - 34 - Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization(2013)
Authors: Stein Aerts
- Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization(2013)
Authors: Delphine Menoret, Marc Santolini, Isabelle Fernandes, Rebecca Spokony, Jennifer Zanet, Ignacio Gonzalez, Yvan Latapie, Pierre Ferrer, Herve Rouault, Kevin P White, et al.
- Six minute walk test in type III spinal muscular atrophy: a 12month longitudinal study(2013)
Authors: Marleen Van den Hauwe, Stein Aerts, Nathalie Goemans
Pages: 624 - 628 - Cancer: Mutations close in on gene regulation(2013)
Authors: Stein Aerts, Jan Cools
Pages: 35 - 6